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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0645900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.0508) R2 : 0.251
β1 : -1.23 (0.192) R2dD : 0.0756 R2D : 0.0152
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.81 (0.158) R2dE : 0.235 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.015 (0.11) R2dN8 : 4.41e-05 R2N8 : 0.0014
σ : 0.946
deviance : 412.41
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.63
memory length : 1221
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.74 0.916 4.55 -3.45 0.447 2.72 2.38 -11.4 0.0594 4.23 28.2 1246 -- --
418.94 0.953 4.32 -1.46 0.372 1.84 2.25 -- 0.0283 6.93 23.85 2488 -- --
395.12 0.926 4.55 -3.35 0.459 2.68 -- -10.7 0.061 3.63 28.2 1256 -- --
407.43 0.94 4.36 -1.19 0.318 1.71 -- -- 0.044 5.95 24.71 1194 -- --
406.17 0.939 4.52 -3.1 -- 2.58 -- -9.18 0.0517 -- 27.89 1246 -- --
489.34 1.04 4.29 -0.642 0.647 -- 2.34 -- 0.25 3.45 -- -- -- --
505.39 1.05 4.31 -0.684 0.66 -- -- -- 0.237 2.65 -- -- -- --
412.41 0.946 4.36 -1.23 -- 1.81 -- -- 0.015 -- 24.63 1221 -- --
437.07 0.974 4.23 -- 0.414 1.29 -- -- 0.483 3.94 28.5 1219 -- --
530.8 1.08 4.3 -0.656 -- -- -- -- 0.254 -- -- -- -- --
517.71 1.06 4.29 -- 0.646 -- -- -- 0.313 2.64 -- -- -- --
447.54 0.985 4.25 -- -- 1.38 -- -- 0.489 -- 28.36 1231 -- --
542.14 1.09 4.28 -- -- -- -- -- 0.327 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.68 temperature 25 720 > th dose dependent rect. 18 14
2 371.26 temperature 25 720 > th dose dependent rect. 18 6
13 375.06 temperature 25 720 > th dose dependent rect. 21 2
36 382.44 temperature 25 720 > th dose dependent sin 11 NA
38 382.79 temperature 30 720 > th dose dependent rect. 18 1
54 383.59 radiation 40 14400 > th dose dependent rect. 15 17
57 383.92 humidity 70 720 < th dose dependent rect. 18 13
58 383.93 humidity 70 720 < th dose dependent rect. 18 2
69 384.02 humidity 70 720 < th dose independent rect. 18 2
83 384.54 radiation 30 14400 > th dose independent rect. 16 1
102 385.82 humidity 70 720 > th dose independent rect. 19 8
117 385.84 temperature 25 1440 > th dose dependent rect. 21 12
118 385.88 radiation 40 14400 > th dose dependent rect. 15 1
134 386.12 humidity 50 1440 < th dose independent rect. 16 1
136 386.26 temperature 25 720 > th dose independent rect. 17 7
138 386.40 radiation 1 720 > th dose independent rect. 18 11
139 386.41 humidity 50 1440 < th dose dependent rect. 16 1
143 386.67 radiation 1 720 > th dose dependent rect. 18 11
156 387.21 radiation 10 1440 < th dose dependent rect. 18 11
176 387.55 temperature 10 720 > th dose dependent rect. 17 8
180 387.76 temperature 30 1440 > th dose dependent rect. 15 4
220 388.38 radiation 1 1440 < th dose independent rect. 18 11
249 388.58 radiation 10 1440 < th dose dependent rect. 18 9
301 389.17 temperature 30 720 > th dose independent rect. 18 1
338 389.40 radiation 1 1440 > th dose independent rect. 18 1
390 389.71 radiation 1 1440 < th dose independent rect. 18 7
406 389.87 radiation 1 1440 < th dose independent rect. 18 2
408 389.97 humidity 50 1440 > th dose independent rect. 16 1
443 390.26 radiation 1 1440 < th dose independent rect. 18 5
452 390.43 radiation 10 1440 < th dose dependent rect. 18 7
454 390.46 temperature 30 1440 < th dose independent rect. 16 4
510 390.82 temperature 30 1440 < th dose independent rect. 16 11
512 390.88 temperature 30 1440 < th dose independent rect. 16 16
517 390.91 temperature 30 1440 < th dose independent rect. 16 13
546 391.21 radiation 10 1440 < th dose dependent rect. 18 2
548 391.23 radiation 1 720 > th dose independent rect. 17 13
567 391.58 temperature 25 1440 > th dose dependent rect. 7 1
579 391.70 temperature 30 1440 > th dose independent sin 12 NA
590 391.99 humidity 60 1440 > th dose independent rect. 17 12
593 392.02 humidity 60 1440 > th dose independent rect. 17 3
616 392.18 humidity 60 1440 > th dose independent rect. 17 6
627 392.32 humidity 60 1440 > th dose independent rect. 17 15
628 392.34 temperature 30 1440 < th dose independent sin 12 NA
666 392.68 humidity 50 1440 > th dose independent rect. 16 17
728 393.18 temperature 25 1440 > th dose dependent rect. 4 4
745 393.22 radiation 10 1440 < th dose dependent rect. 18 5
819 393.72 temperature 30 1440 > th dose dependent no NA NA
912 393.74 wind 1 1440 < th dose independent rect. 4 2
919 393.90 temperature 30 1440 < th dose independent rect. 16 20
970 394.21 temperature 30 1440 > th dose independent rect. 16 22
973 394.22 temperature 30 1440 < th dose independent rect. 16 18
984 394.29 radiation 30 14400 < th dose independent rect. 16 11