BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0644200 Os04g0644200|Os04g0644200
(435 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0644200 Conserved hypothetical protein 624 e-179
Os01g0838900 Trp repressor/replication initiator domain con... 92 6e-19
Os07g0175100 Homeodomain-like containing protein 85 1e-16
Os11g0702700 Homeodomain-like containing protein 81 1e-15
>Os04g0644200 Conserved hypothetical protein
Length = 435
Score = 624 bits (1610), Expect = e-179, Method: Compositional matrix adjust.
Identities = 326/435 (74%), Positives = 326/435 (74%)
Query: 1 MVAAGRKRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFASDRDLLLHPSQTL 60
MVAAGRKRRSR RFASDRDLLLHPSQTL
Sbjct: 1 MVAAGRKRRSRSALAVVPATPSPPSPPQLTSLLALLASSVSLALRFASDRDLLLHPSQTL 60
Query: 61 ELDPLVLAAARGVSRLLAMLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESHSLPD 120
ELDPLVLAAARGVSRLLAMLP ESHSLPD
Sbjct: 61 ELDPLVLAAARGVSRLLAMLPLHLQTLTLTSMSLSPPAPSPPLPSSWFLRLLSESHSLPD 120
Query: 121 SAWRDAFRMSRPAFFQXXXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXX 180
SAWRDAFRMSRPAFFQ K
Sbjct: 121 SAWRDAFRMSRPAFFQLLHSLALSDPAAASSSSLALPPDHKLGAALFRLAHAAPARAVAR 180
Query: 181 XFGLPSPAVAARAFYEVCRTIADRLAILLDLGAPDRIARAVPGFCALSLPNCCGALGYAR 240
FGLPSPAVAARAFYEVCRTIADRLAILLDLGAPDRIARAVPGFCALSLPNCCGALGYAR
Sbjct: 181 RFGLPSPAVAARAFYEVCRTIADRLAILLDLGAPDRIARAVPGFCALSLPNCCGALGYAR 240
Query: 241 IGDAVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLYSSQSLVLANAPHGELIGGSV 300
IGDAVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLYSSQSLVLANAPHGELIGGSV
Sbjct: 241 IGDAVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLYSSQSLVLANAPHGELIGGSV 300
Query: 301 PRYFLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLL 360
PRYFLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLL
Sbjct: 301 PRYFLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLL 360
Query: 361 DECWKGECQEALPYVVVAGCLLHNFLIKCGEPDPEEIQEGAAAELFSDFEGEKDKEGERI 420
DECWKGECQEALPYVVVAGCLLHNFLIKCGEPDPEEIQEGAAAELFSDFEGEKDKEGERI
Sbjct: 361 DECWKGECQEALPYVVVAGCLLHNFLIKCGEPDPEEIQEGAAAELFSDFEGEKDKEGERI 420
Query: 421 RDVLAVHLSLVSRNQ 435
RDVLAVHLSLVSRNQ
Sbjct: 421 RDVLAVHLSLVSRNQ 435
>Os01g0838900 Trp repressor/replication initiator domain containing protein
Length = 396
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 39/280 (13%)
Query: 182 FGLPSPAVAARAFYEVCRTIADRLAILLDLGAPDRIARAVPGFCALS-LPNCCGALGYAR 240
FG+ A++ ++ + +R A L P+ +A F + LPNCCGA+
Sbjct: 120 FGMNHSAIS-NITWKFIEALEERAANHLKWPTPEEMATVKSKFEKIQGLPNCCGAIDTTH 178
Query: 241 I------------------GDAVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLY-- 280
I ++++ QA+VDA+ RF DV GW ++ + IL + Y
Sbjct: 179 ILMCSSAQPNSNVWLDGENRNSMVLQAIVDADMRFRDVVSGWPGSLNDSCILRTSGFYRL 238
Query: 281 --SSQSLVLANAPHGELIGGSVPRYFLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNV 338
L GE G V Y LG A P+LPWL+TPY + D ++ FN
Sbjct: 239 CEKGARLDGQTELPGEPAGSVVRDYILGDASYPLLPWLMTPYREKDLS---PAKADFNKR 295
Query: 339 HSHGMRLVRNAFGHVRSRWRLLD-ECWKGECQEALPYVVVAGCLLHNFLI------KCGE 391
H+ + +V+ A ++ RW++L E W+ + + LP ++ CLL N +I + G
Sbjct: 296 HAATIMVVQGALAKLKERWQVLKGELWRPD-KHRLPRIIYVCCLLTNIMIDLEDAARGGM 354
Query: 392 PDPEEIQEGAAAELFSDFEGEKDKEGERIRDVLAVHLSLV 431
P P + + FSD D +RD L ++S +
Sbjct: 355 P-PSHNHDDGYRQQFSDV---ADVGAAALRDQLCQYVSRI 390
>Os07g0175100 Homeodomain-like containing protein
Length = 436
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 43/233 (18%)
Query: 229 LPNCCGALGYARI------------------GDAVIAQALVDAEGRFLDVSVGWDTAMAP 270
LPNCCGA+ I ++ Q +VD E RF+D+ GW +M
Sbjct: 216 LPNCCGAIDATHIIMTLPAVESSEDWCDPAKNYSMFLQGIVDDEMRFIDIVTGWPGSMMF 275
Query: 271 AEILPRTKLYSS-------QSLVLANAPHGELIGGSVPRYFLGPACCPMLPWLVTPYNDM 323
+ +L + + V+ +A +GE + Y +G C P+LPWL+TPY
Sbjct: 276 SRLLKCSGFFKHCDAGTRLDGPVMVSAENGE-----IREYIVGNNCYPLLPWLMTPYEGE 330
Query: 324 DAKNGMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLLDECWKGECQEALPYVVVAGCLLH 383
M+ FN L A ++ WR+L++ + LP +++ CLLH
Sbjct: 331 SLSAPMAS---FNARQKAARTLGPRALSRLKGSWRILNKVMWRPDKNKLPSIILVCCLLH 387
Query: 384 NFLIKCGE---PD---PEEIQEGAAAELFSDFEGEKDKEGERIRDVLAVHLSL 430
N +I C + PD P+ G + E + D G+ +RDV+ +L +
Sbjct: 388 NIIIDCEDELLPDVQLPDHHDTGYSEEKCE----QVDPNGKIMRDVITGYLQI 436
>Os11g0702700 Homeodomain-like containing protein
Length = 391
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 229 LPNCCGALGYARI-------------------GDAVIAQALVDAEGRFLDVSVGWDTAMA 269
LPNCCG + I +++ QA++ + RF+D+ GW +M
Sbjct: 169 LPNCCGVVDTTHITMCLSSAEPNCKVWLDHEKNYSMVLQAVISPDMRFMDIVTGWPGSMK 228
Query: 270 PAEILPRTKLYS--SQSLVLANAPHGELIGGSVPRYFLGPACCPMLPWLVTPYNDMDAKN 327
+ IL + L+ + L + G + Y +G A P+LPWL+TPY + D +
Sbjct: 229 ESSILHSSGLFKMCEKGARLNGSKMVVSDGSEIGEYIIGDAGYPLLPWLLTPYQEKDLSD 288
Query: 328 GMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLLD-ECWKGECQEALPYVVVAGCLLHNFL 386
+ FN H+ + + + + + W+ L E W+ + + LP ++ C+LHN +
Sbjct: 289 SKLE---FNKRHAAAITVAPSTLANFKDTWKFLHGEMWRPD-KHRLPRIIHVCCMLHNII 344
Query: 387 IKCGEPDPEE--IQEGAAAELFSDFEGEKDKEGERIRDVLAVHLSLVSR 433
I + +E + A D+ R+RD L+ H LVSR
Sbjct: 345 ICLQDATIDEAAMSNDHDANYKQQVCQLADENAVRVRDKLSEH--LVSR 391
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,711,975
Number of extensions: 436266
Number of successful extensions: 1025
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 5
Length of query: 435
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 331
Effective length of database: 11,605,545
Effective search space: 3841435395
Effective search space used: 3841435395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)