Os04g0644200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0644200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.03 | 0.51 | 7.19 | 1.15 | 0.0147 | 0.953 | 1.47 | 2.11 | -0.24 | 6.31 | 28.77 | 1211 | -- | -- |
| 118.64 | 0.507 | 7.25 | 0.793 | 0.0441 | 1.15 | 1.6 | -- | -0.293 | 6.09 | 28.88 | 1194 | -- | -- |
| 122.6 | 0.516 | 7.21 | 1.15 | 0.0991 | 0.985 | -- | 1.93 | -0.296 | 1.01 | 27.9 | 1234 | -- | -- |
| 123.04 | 0.517 | 7.26 | 0.743 | 0.0974 | 1.19 | -- | -- | -0.332 | 1.29 | 28.22 | 1233 | -- | -- |
| 123.17 | 0.517 | 7.21 | 1.19 | -- | 0.999 | -- | 2.12 | -0.3 | -- | 27.62 | 1225 | -- | -- |
| 184.14 | 0.636 | 7.27 | 1.1 | 0.202 | -- | 1.44 | -- | -0.415 | 4.47 | -- | -- | -- | -- |
| 186.77 | 0.64 | 7.28 | 1.08 | 0.296 | -- | -- | -- | -0.423 | 1.22 | -- | -- | -- | -- |
| 123.6 | 0.518 | 7.26 | 0.737 | -- | 1.22 | -- | -- | -0.348 | -- | 27.94 | 1223 | -- | -- |
| 135.54 | 0.542 | 7.31 | -- | 0.0576 | 1.4 | -- | -- | -0.568 | 0.835 | 26.1 | 1234 | -- | -- |
| 192.17 | 0.648 | 7.27 | 1.09 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 217.68 | 0.69 | 7.31 | -- | 0.314 | -- | -- | -- | -0.543 | 1.36 | -- | -- | -- | -- |
| 135.71 | 0.543 | 7.31 | -- | -- | 1.42 | -- | -- | -0.569 | -- | 26.09 | 1223 | -- | -- |
| 223.77 | 0.698 | 7.3 | -- | -- | -- | -- | -- | -0.538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.45 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 5 | 122.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 7 | 122.75 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 10 | 123.09 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 13 | 123.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 14 | 123.38 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 24 | 123.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 26 | 123.77 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 30 | 123.93 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 37 | 124.02 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 38 | 124.03 | temperature | 30 | 1440 | > th | dose dependent | sin | 17 | NA |
| 43 | 124.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 45 | 124.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 68 | 124.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 105 | 124.19 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 197 | 124.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 214 | 124.32 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 217 | 124.34 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 274 | 124.45 | temperature | 25 | 1440 | > th | dose dependent | sin | 5 | NA |
| 279 | 124.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 17 |
| 373 | 124.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 421 | 125.08 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 445 | 125.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 473 | 125.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 484 | 125.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 492 | 125.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 511 | 125.36 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 516 | 125.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 529 | 125.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 536 | 125.39 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 560 | 125.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 565 | 125.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 591 | 125.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 626 | 125.52 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 753 | 125.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 756 | 125.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 771 | 125.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 780 | 125.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 822 | 125.83 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 829 | 125.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 836 | 125.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 858 | 125.85 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |