BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0644200 Os04g0644200|Os04g0644200
(435 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G72270.1 | chr1:27199733-27211122 REVERSE LENGTH=2846 197 1e-50
AT3G63270.1 | chr3:23375932-23377398 REVERSE LENGTH=397 89 4e-18
AT3G55350.1 | chr3:20518518-20520690 FORWARD LENGTH=407 80 3e-15
AT3G19120.1 | chr3:6609678-6611018 REVERSE LENGTH=447 67 2e-11
AT5G12010.1 | chr5:3877975-3879483 REVERSE LENGTH=503 62 4e-10
AT4G29780.1 | chr4:14579859-14581481 FORWARD LENGTH=541 50 3e-06
>AT1G72270.1 | chr1:27199733-27211122 REVERSE LENGTH=2846
Length = 2845
Score = 197 bits (500), Expect = 1e-50, Method: Composition-based stats.
Identities = 112/272 (41%), Positives = 151/272 (55%), Gaps = 34/272 (12%)
Query: 182 FGLPSPAVAARAFYEVCRTIADRLAILLDLGAPDRIARAVPGFCALSLPNCCGALGYARI 241
FG S + A+R+F+ VC+ I ++L+ LD PD F LPNC G +G+ R
Sbjct: 143 FGFDSTSQASRSFFTVCKLINEKLSQQLDDPKPD--------FSPNLLPNCYGVVGFGRF 194
Query: 242 ---------GDAVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLYSSQSLVLANAPH 292
+++ QALVD+ GRF+D+S GW + M P I +TKL+S VL+ AP
Sbjct: 195 EVKGKLLGAKGSILVQALVDSNGRFVDISAGWPSTMKPEAIFRQTKLFSIAEEVLSGAPT 254
Query: 293 GELIGGSVPRYFLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHSHGMRLVRNAFGH 352
G VPRY LG +C P+LPWLVTPY+ + +E FNNV G+ V AF
Sbjct: 255 KLGNGVLVPRYILGDSCLPLLPWLVTPYDLTSDEESFREE--FNNVVHTGLHSVEIAFAK 312
Query: 353 VRSRWRLLDECWKGECQEALPYVVVAGCLLHNFLIKCGEPDP--EEIQEGAAA----ELF 406
VR+RWR+LD+ WK E E +P+V+ GCLLHNFL+ G+ D EE G A E+
Sbjct: 313 VRARWRILDKKWKPETIEFMPFVITTGCLLHNFLVNSGDDDDSVEECVNGCEAGDNGEMR 372
Query: 407 SD---------FEGEKDKEGERIRDVLAVHLS 429
D FEGE +E +RIRD +A +LS
Sbjct: 373 KDDDKEEETRSFEGEAYRESKRIRDAIAENLS 404
>AT3G63270.1 | chr3:23375932-23377398 REVERSE LENGTH=397
Length = 396
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 112/270 (41%), Gaps = 27/270 (10%)
Query: 182 FGLPSPAVAARAFYEVCRTIADRLAILLDLGAPDRIARAVPGFCAL-SLPNCCGALGYAR 240
FG+ V+ + + + +R L DRI F + LPNCCGA+
Sbjct: 129 FGVGQSTVS-QVTWRFIEALEERAKHHLRWPDSDRIEEIKSKFEEMYGLPNCCGAIDTTH 187
Query: 241 I------------------GDAVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLYS- 281
I ++ Q + D E RFL++ GW M +++L + +
Sbjct: 188 IIMTLPAVQASDDWCDQEKNYSMFLQGVFDHEMRFLNMVTGWPGGMTVSKLLKFSGFFKL 247
Query: 282 -SQSLVLANAPHGELIGGSVPRYFLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHS 340
+ +L P G + Y +G P+LPWL+TP++ + M FN H
Sbjct: 248 CENAQILDGNPKTLSQGAQIREYVVGGISYPLLPWLITPHDSDHPSDSMVA---FNERHE 304
Query: 341 HGMRLVRNAFGHVRSRWRLLDECWKGECQEALPYVVVAGCLLHNFLIKCGEPDPEEIQ-E 399
+ AF ++ WR+L + + LP +++ CLLHN +I CG+ E++
Sbjct: 305 KVRSVAATAFQQLKGSWRILSKVMWRPDRRKLPSIILVCCLLHNIIIDCGDYLQEDVPLS 364
Query: 400 GAAAELFSD-FEGEKDKEGERIRDVLAVHL 428
G ++D + + + G +R L HL
Sbjct: 365 GHHDSGYADRYCKQTEPLGSELRGCLTEHL 394
>AT3G55350.1 | chr3:20518518-20520690 FORWARD LENGTH=407
Length = 406
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 211 LGAPDRIARAVPGFCALS-LPNCCGALGYARI-------------------GDAVIAQAL 250
L P ++ F +S LPNCCGA+ I ++ QA+
Sbjct: 161 LSWPSKLDEIKSKFEKISGLPNCCGAIDITHIVMNLPAVEPSNKVWLDGEKNFSMTLQAV 220
Query: 251 VDAEGRFLDVSVGWDTAMAPAEILPRTKLYS----SQSLVLANAPHGELIGGSVPRYFLG 306
VD + RFLDV GW ++ +L + Y + L P E + Y +G
Sbjct: 221 VDPDMRFLDVIAGWPGSLNDDVVLKNSGFYKLVEKGKRLNGEKLPLSERT--ELREYIVG 278
Query: 307 PACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLLDECWKG 366
+ P+LPWL+TPY K ++ FN HS + + A ++ RWR+++
Sbjct: 279 DSGFPLLPWLLTPYQ---GKPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMWM 335
Query: 367 ECQEALPYVVVAGCLLHNFLI 387
+ LP ++ CLLHN +I
Sbjct: 336 PDRNRLPRIIFVCCLLHNIII 356
>AT3G19120.1 | chr3:6609678-6611018 REVERSE LENGTH=447
Length = 446
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 42/280 (15%)
Query: 187 PAVAARAFYEVCRTIADRLA---ILLDLGAPDRIARAVPGFCAL-SLPNCCGALGYARIG 242
P + ++ V R +A +L I + +G R+ GF L SLPN CGA+ +
Sbjct: 176 PYLISKITNMVTRLLATKLYPEFIKIPVGK-RRLIETTQGFEELTSLPNICGAIDSTPVK 234
Query: 243 -------------------DAVIAQALVDAEGRFLDVSV----GWDTAMAPAEILPRTKL 279
DAV+ Q + D + F DV V G D + + L +L
Sbjct: 235 LRRRTKLNPRNIYGCKYGYDAVLLQVVADHKKIFWDVCVKAPGGEDDSSHFRDSLLYKRL 294
Query: 280 YSSQSLVLANAPHGELIGGSVPRYFLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVH 339
+S +V + + G V Y +G C P+L +L+TP++ +G E++F+ +
Sbjct: 295 -TSGDIVWEKVIN--IRGHHVRPYIVGDWCYPLLSFLMTPFS--PNGSGTPPENLFDGML 349
Query: 340 SHGMRLVRNAFGHVRSRWRLLDECWKGECQEALPYVVVAGCLLHNFLIKCGEPDPEEIQE 399
G +V A G +++RW++L G P +VA C+LHN EP+PE ++
Sbjct: 350 MKGRSVVVEAIGLLKARWKILQSLNVGVNHA--PQTIVACCVLHNLCQIAREPEPEIWKD 407
Query: 400 ----GAAAELFSDFEGEKDKEGERIRDVLA--VHLSLVSR 433
G A + E + GE +R LA +H L SR
Sbjct: 408 PDEAGTPARVLES-ERQFYYYGESLRQALAEDLHQRLSSR 446
>AT5G12010.1 | chr5:3877975-3879483 REVERSE LENGTH=503
Length = 502
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 244 AVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLYSSQSLVLANAPHGELIGGSVPRY 303
++ QA+V+ +G F D+ +GW +M ++L ++ LY A +G L+ G +
Sbjct: 321 SITIQAVVNPKGVFTDLCIGWPGSMPDDKVLEKSLLYQ-------RANNGGLLKGM---W 370
Query: 304 FLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLLDEC 363
G P+L W++ PY +N + FN S + + AFG ++ RW L +
Sbjct: 371 VAGGPGHPLLDWVLVPYTQ---QNLTWTQHAFNEKMSEVQGVAKEAFGRLKGRWACLQKR 427
Query: 364 WKGECQEALPYVVVAGCLLHNF 385
+ + Q+ LP V+ A C+LHN
Sbjct: 428 TEVKLQD-LPTVLGACCVLHNI 448
>AT4G29780.1 | chr4:14579859-14581481 FORWARD LENGTH=541
Length = 540
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 244 AVIAQALVDAEGRFLDVSVGWDTAMAPAEILPRTKLYSSQSLVLANAPHGELIGGSVPRY 303
++ Q +V+A+G F DV +G ++ +IL ++ SL A G L +
Sbjct: 359 SITVQGVVNADGIFTDVCIGNPGSLTDDQILEKS------SLSRQRAARGMLRDS----W 408
Query: 304 FLGPACCPMLPWLVTPYNDMDAKNGMSKESIFNNVHSHGMRLVRNAFGHVRSRWRLLDEC 363
+G + P+ +L+ PY +N + FN + AF ++ RW L +
Sbjct: 409 IVGNSGFPLTDYLLVPYT---RQNLTWTQHAFNESIGEIQGIATAAFERLKGRWACLQKR 465
Query: 364 WKGECQEALPYVVVAGCLLHNFLIKCGEPDPEEIQEGAAAELFSD 408
+ + Q+ LPYV+ A C+LHN E EE+ E+F D
Sbjct: 466 TEVKLQD-LPYVLGACCVLHNIC----EMRKEEMLPELKFEVFDD 505
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,969,540
Number of extensions: 250369
Number of successful extensions: 511
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 6
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)