BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0637000 Os04g0637000|AK066906
         (155 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0637000  Similar to Basic leucine zipper protein (Ligul...   290   2e-79
Os08g0176900  Similar to Transcription factor HBP-1b(C38) (F...    72   1e-13
Os01g0279900  Similar to Transcription factor TGA6 (AtbZIP45...    66   1e-11
Os03g0318600  Similar to Transcription factor HBP-1b(C38) (F...    65   2e-11
Os02g0194900  Eukaryotic transcription factor, DNA-binding d...    65   2e-11

>Os04g0637000 Similar to Basic leucine zipper protein (Liguleless2)
          Length = 155

 Score =  290 bits (743), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/155 (90%), Positives = 141/155 (90%)

Query: 1   MELYPGYLEDHFNIHKLSISSASPPEYMTSASTQFAAPVRMGAYDRPPPVGMWSHEQFKV 60
           MELYPGYLEDHFNIHKLSISSASPPEYMTSASTQFAAPVRMGAYDRPPPVGMWSHEQFKV
Sbjct: 1   MELYPGYLEDHFNIHKLSISSASPPEYMTSASTQFAAPVRMGAYDRPPPVGMWSHEQFKV 60

Query: 61  DNGQATSASTIMEAEMKFENRLEEIPQVVLEEGRNVDQEASKPPDKVLRRLAQNREAARK 120
           DNGQATSASTIMEAEMKFENRLEEIPQVVLEEGRNVDQEASKPPDKVLRRLAQNREAARK
Sbjct: 61  DNGQATSASTIMEAEMKFENRLEEIPQVVLEEGRNVDQEASKPPDKVLRRLAQNREAARK 120

Query: 121 SRLRKKAYIQQLETSRLKXXXXXXXXXXXXXXVHG 155
           SRLRKKAYIQQLETSRLK              VHG
Sbjct: 121 SRLRKKAYIQQLETSRLKLAQLEQELQRARQQVHG 155



>Os08g0176900 Similar to Transcription factor HBP-1b(C38) (Fragment)
          Length = 389

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/44 (81%), Positives = 40/44 (90%)

Query: 95  NVDQEASKPPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
           + +QEASKP DK+ RRLAQNREAARKSRLRKKAYIQ LETSR+K
Sbjct: 98  SFEQEASKPRDKIQRRLAQNREAARKSRLRKKAYIQNLETSRMK 141



>Os01g0279900 Similar to Transcription factor TGA6 (AtbZIP45). Splice isoform 2
          Length = 329

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 80  NRLEEIPQVVLEEGRNVDQEASKPPD-KVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
           N + E  Q+ L    + D+   K  D K LRRLAQNREAARKSRLRKKAY+QQLE SRLK
Sbjct: 18  NHMLEPGQLALAAASDSDRSKDKHEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLK 77



>Os03g0318600 Similar to Transcription factor HBP-1b(C38) (Fragment)
          Length = 333

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 36/38 (94%), Gaps = 1/38 (2%)

Query: 102 KPPD-KVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
           KP D KVLRRLAQNREAARKSRLRKKAY+QQLE+S+LK
Sbjct: 44  KPMDQKVLRRLAQNREAARKSRLRKKAYVQQLESSKLK 81



>Os02g0194900 Eukaryotic transcription factor, DNA-binding domain containing
           protein
          Length = 355

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%), Gaps = 1/43 (2%)

Query: 97  DQEASKPPD-KVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
           + E  K PD K LRRLAQNREAARKSRLRKKAYIQ LETSR++
Sbjct: 177 EHEGPKTPDAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIR 219



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,003,942
Number of extensions: 186752
Number of successful extensions: 536
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 6
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)