Os02g0194900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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Os02g0194900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic transcription factor, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.56 | 0.31 | 3.15 | 0.215 | 0.144 | -0.232 | 0.185 | -0.384 | 0.0268 | 11.1 | 1014 | 7294 | -- | -- |
| 44.29 | 0.31 | 3.13 | 0.34 | 0.143 | -0.235 | 0.155 | -- | 0.0595 | 11 | 1014 | 7994 | -- | -- |
| 43.7 | 0.308 | 3.15 | 0.223 | 0.143 | -0.233 | -- | -0.38 | 0.0265 | 10.8 | 1014 | 7293 | -- | -- |
| 44.39 | 0.31 | 3.13 | 0.345 | 0.143 | -0.235 | -- | -- | 0.0584 | 10.8 | 1014 | 7994 | -- | -- |
| 44.98 | 0.312 | 3.15 | 0.221 | -- | -0.232 | -- | -0.38 | 0.0269 | -- | 1014 | 7310 | -- | -- |
| 46.8 | 0.321 | 3.15 | 0.248 | 0.142 | -- | 0.175 | -- | 0.000385 | 11.1 | -- | -- | -- | -- |
| 46.93 | 0.321 | 3.14 | 0.254 | 0.142 | -- | -- | -- | 0.00077 | 10.9 | -- | -- | -- | -- |
| 45.67 | 0.315 | 3.14 | 0.342 | -- | -0.234 | -- | -- | 0.0566 | -- | 1014 | 8019 | -- | -- |
| 47.26 | 0.32 | 3.14 | -- | 0.139 | -0.166 | -- | -- | 0.00653 | 10.7 | 1014 | 8743 | -- | -- |
| 48.18 | 0.324 | 3.15 | 0.251 | -- | -- | -- | -- | -0.000189 | -- | -- | -- | -- | -- |
| 48.63 | 0.326 | 3.15 | -- | 0.14 | -- | -- | -- | -0.0276 | 10.8 | -- | -- | -- | -- |
| 48.45 | 0.324 | 3.15 | -- | -- | -0.167 | -- | -- | 0.00701 | -- | 1014 | 9053 | -- | -- |
| 49.85 | 0.33 | 3.15 | -- | -- | -- | -- | -- | -0.0281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.38 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 2 | 41.39 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 5 | 41.57 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 6 | 41.59 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 8 | 41.60 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 9 | 41.63 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 13 | 41.73 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 24 | 41.90 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 52 | 42.13 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 54 | 42.15 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 55 | 42.15 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 56 | 42.15 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 59 | 42.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 63 | 42.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 71 | 42.21 | wind | 5.0 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 82 | 42.24 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 21 | 12 |
| 85 | 42.26 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 12 |
| 99 | 42.32 | wind | 5.0 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 102 | 42.33 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 105 | 42.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 115 | 42.35 | wind | 5.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 191 | 42.51 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 303 | 42.72 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 311 | 42.74 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 393 | 42.92 | wind | 5.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 401 | 42.93 | wind | 5.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 449 | 43.01 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 574 | 43.24 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 577 | 43.24 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 602 | 43.30 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 662 | 43.35 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 679 | 43.38 | wind | 5.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 709 | 43.43 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 713 | 43.43 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 720 | 43.44 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 721 | 43.44 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 764 | 43.47 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 780 | 43.47 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 800 | 43.48 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 818 | 43.50 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 891 | 43.55 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 912 | 43.56 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 14 |
| 924 | 43.57 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 952 | 43.58 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 979 | 43.59 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |