Os03g0318600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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Os03g0318600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.77 | 0.293 | 11.1 | -0.0782 | 0.396 | 0.511 | -0.162 | -0.589 | 0.00687 | 2.36 | 72 | 793 | -- | -- |
| 39.18 | 0.292 | 11.1 | -0.127 | 0.407 | 0.488 | -0.104 | -- | -0.000871 | 2.4 | 73.38 | 818 | -- | -- |
| 38.84 | 0.29 | 11.1 | -0.0853 | 0.395 | 0.507 | -- | -0.488 | 0.0109 | 2.29 | 73 | 791 | -- | -- |
| 39.21 | 0.292 | 11.1 | -0.123 | 0.416 | 0.482 | -- | -- | 0.000785 | 2.44 | 73 | 832 | -- | -- |
| 44.5 | 0.311 | 11.1 | -0.121 | -- | 0.447 | -- | -0.197 | 0.00736 | -- | 79.03 | 457 | -- | -- |
| 43.5 | 0.309 | 11.1 | -0.182 | 0.472 | -- | -0.201 | -- | -0.0273 | 4.63 | -- | -- | -- | -- |
| 43.61 | 0.309 | 11.1 | -0.181 | 0.47 | -- | -- | -- | -0.0262 | 4.6 | -- | -- | -- | -- |
| 44.34 | 0.31 | 11.1 | -0.176 | -- | 0.421 | -- | -- | -0.00916 | -- | 80 | 470 | -- | -- |
| 39.61 | 0.293 | 11.1 | -- | 0.411 | 0.508 | -- | -- | 0.0132 | 2.29 | 73.74 | 824 | -- | -- |
| 55.37 | 0.348 | 11.1 | -0.163 | -- | -- | -- | -- | -0.0139 | -- | -- | -- | -- | -- |
| 44.47 | 0.312 | 11.1 | -- | 0.467 | -- | -- | -- | -0.00611 | 4.61 | -- | -- | -- | -- |
| 44.75 | 0.312 | 11.1 | -- | -- | 0.452 | -- | -- | 0.0216 | -- | 74.97 | 410 | -- | -- |
| 56.07 | 0.349 | 11.1 | -- | -- | -- | -- | -- | 0.00414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.64 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 2 | 37.66 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 3 | 38.13 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 17 | 38.21 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 18 | 38.30 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 19 | 38.36 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 20 | 38.42 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 22 | 38.50 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 23 | 38.56 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 24 | 38.58 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 12 |
| 25 | 38.61 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 26 | 38.62 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 37 | 38.63 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 48 | 38.63 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 50 | 38.67 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 65 | 38.69 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 66 | 38.69 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 67 | 38.72 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 7 |
| 71 | 38.74 | humidity | 70.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 72 | 38.75 | humidity | 70.0 | 720 | > th | dose independent | sin | 15 | NA |
| 73 | 38.76 | humidity | 70.0 | 720 | > th | dose independent | rect. | 10 | 21 |
| 75 | 38.77 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 77 | 38.78 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 80 | 38.79 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 83 | 38.80 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 10 |
| 84 | 38.80 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 17 |
| 94 | 38.85 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 95 | 38.85 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 97 | 38.86 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 101 | 38.88 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 102 | 38.88 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 106 | 38.90 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 107 | 38.91 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 114 | 38.94 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 116 | 38.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 119 | 38.94 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 123 | 38.94 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 132 | 38.94 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 133 | 38.94 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 134 | 38.94 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 143 | 38.94 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 145 | 38.94 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 148 | 38.94 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 152 | 38.96 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 153 | 38.96 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 156 | 38.96 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 159 | 38.96 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 161 | 38.96 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 163 | 38.96 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 170 | 38.96 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 171 | 38.96 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 177 | 38.96 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 191 | 38.98 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 195 | 38.99 | humidity | 70.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 201 | 39.01 | humidity | 80.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 203 | 39.02 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 207 | 39.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 210 | 39.04 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 216 | 39.06 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 219 | 39.06 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 227 | 39.09 | humidity | 80.0 | 720 | > th | dose independent | rect. | 4 | 18 |
| 228 | 39.09 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 22 |
| 229 | 39.09 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 230 | 39.09 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 285 | 39.13 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 290 | 39.14 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 311 | 39.16 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 22 |
| 315 | 39.17 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 317 | 39.17 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 320 | 39.18 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 321 | 39.18 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 326 | 39.18 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 332 | 39.18 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 344 | 39.19 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 347 | 39.20 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 354 | 39.20 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 357 | 39.20 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 18 |
| 361 | 39.21 | humidity | 80.0 | 720 | > th | dose independent | rect. | 6 | 16 |
| 364 | 39.21 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 365 | 39.21 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 367 | 39.22 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 373 | 39.22 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 407 | 39.22 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 411 | 39.22 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 419 | 39.23 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 20 |
| 432 | 39.24 | radiation | 10.0 | 720 | > th | dose independent | rect. | 14 | 16 |
| 442 | 39.25 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 6 |
| 462 | 39.26 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 464 | 39.26 | radiation | 10.0 | 720 | > th | dose independent | rect. | 14 | 4 |
| 494 | 39.27 | humidity | 70.0 | 720 | > th | dose independent | rect. | 13 | 23 |
| 497 | 39.27 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 499 | 39.28 | humidity | 50.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 500 | 39.28 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 501 | 39.28 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 2 |
| 504 | 39.28 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 525 | 39.29 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 549 | 39.30 | humidity | 80.0 | 720 | < th | dose independent | rect. | 8 | 14 |
| 561 | 39.31 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 563 | 39.31 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 14 |
| 565 | 39.31 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 22 | 19 |
| 567 | 39.31 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 579 | 39.32 | humidity | 50.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 587 | 39.32 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 610 | 39.33 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 614 | 39.33 | humidity | 70.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 674 | 39.34 | wind | 1.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 686 | 39.35 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 747 | 39.36 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 7 | NA |
| 750 | 39.36 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 773 | 39.37 | humidity | 70.0 | 720 | > th | dose independent | no | NA | NA |
| 855 | 39.38 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 882 | 39.39 | radiation | 10.0 | 720 | > th | dose independent | sin | 14 | NA |
| 883 | 39.39 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 884 | 39.39 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 890 | 39.39 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 926 | 39.40 | radiation | 40.0 | 1440 | > th | dose dependent | no | NA | NA |