Os04g0637000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Basic leucine zipper protein (Liguleless2).
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Os04g0637000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Basic leucine zipper protein (Liguleless2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.06 | 0.443 | 10.8 | -1.51 | 0.276 | 1.53 | 0.883 | -5.1 | -0.332 | 2.99 | 21.62 | 1358 | -- | -- |
| 100.1 | 0.466 | 10.7 | -0.475 | 0.344 | 1.81 | 0.662 | -- | -0.111 | 2.83 | 9.741 | 7359 | -- | -- |
| 91.31 | 0.445 | 10.8 | -1.51 | 0.309 | 1.53 | -- | -5 | -0.343 | 3.61 | 21.68 | 1388 | -- | -- |
| 101.28 | 0.469 | 10.7 | -0.489 | 0.375 | 1.83 | -- | -- | -0.127 | 3.55 | 9.635 | 7469 | -- | -- |
| 95.61 | 0.455 | 10.8 | -1.53 | -- | 1.61 | -- | -5.21 | -0.329 | -- | 21.88 | 1313 | -- | -- |
| 154.87 | 0.583 | 10.6 | 0.456 | 0.401 | -- | 0.713 | -- | 0.371 | 3.02 | -- | -- | -- | -- |
| 156.5 | 0.586 | 10.6 | 0.44 | 0.409 | -- | -- | -- | 0.367 | 3.32 | -- | -- | -- | -- |
| 107.24 | 0.482 | 10.7 | -0.479 | -- | 1.86 | -- | -- | -0.101 | -- | 10.32 | 6968 | -- | -- |
| 105.55 | 0.479 | 10.7 | -- | 0.331 | 1.54 | -- | -- | 0.00542 | 3.55 | 6.562 | 7028 | -- | -- |
| 165.93 | 0.602 | 10.6 | 0.458 | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
| 161.61 | 0.595 | 10.6 | -- | 0.417 | -- | -- | -- | 0.318 | 3.32 | -- | -- | -- | -- |
| 111.53 | 0.492 | 10.7 | -- | -- | 1.59 | -- | -- | 0.00752 | -- | 8.941 | 6952 | -- | -- |
| 171.45 | 0.611 | 10.6 | -- | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 2 | 82.59 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 3 | 84.19 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 4 | 84.25 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 5 | 84.42 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 6 | 84.50 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 9 | 85.08 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 13 | 85.48 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 14 | 85.55 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 15 | 85.55 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 19 | 85.69 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 21 | 85.79 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 25 | 85.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 32 | 86.04 | wind | 3 | 43200 | > th | dose dependent | sin | 21 | NA |
| 35 | 86.10 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 37 | 86.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 44 | 86.36 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 53 | 86.51 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 55 | 86.55 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 57 | 86.58 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 61 | 86.62 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 63 | 86.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 64 | 86.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 69 | 86.76 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 70 | 86.77 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 77 | 86.82 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 96 | 87.01 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 103 | 87.05 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 122 | 87.08 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 125 | 87.11 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 132 | 87.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 149 | 87.30 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 161 | 87.35 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 165 | 87.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 231 | 87.73 | wind | 5 | 43200 | < th | dose independent | sin | 20 | NA |
| 256 | 87.86 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 257 | 87.87 | radiation | 20 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 264 | 87.88 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 348 | 88.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 368 | 88.33 | wind | 5 | 43200 | > th | dose independent | sin | 20 | NA |
| 425 | 88.52 | wind | 9 | 43200 | < th | dose dependent | sin | 22 | NA |
| 464 | 88.58 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 657 | 89.16 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 682 | 89.21 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 700 | 89.29 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 753 | 89.51 | radiation | 10 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 764 | 89.55 | radiation | 10 | 43200 | > th | dose dependent | sin | 9 | NA |
| 882 | 89.86 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 929 | 89.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 16 |