BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0637000 Os04g0637000|AK066906
(155 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65210.2 | chr5:26059031-26060749 FORWARD LENGTH=369 91 2e-19
AT5G10030.1 | chr5:3137648-3139295 REVERSE LENGTH=365 90 5e-19
AT1G77920.1 | chr1:29298959-29300607 FORWARD LENGTH=369 66 7e-12
AT5G06950.1 | chr5:2152323-2154174 FORWARD LENGTH=331 65 2e-11
AT3G12250.4 | chr3:3906351-3908583 FORWARD LENGTH=356 64 3e-11
AT1G22070.1 | chr1:7789651-7791821 FORWARD LENGTH=385 64 3e-11
AT1G08320.1 | chr1:2622113-2627451 REVERSE LENGTH=482 62 1e-10
AT1G68640.1 | chr1:25769739-25772303 REVERSE LENGTH=453 62 1e-10
AT5G06960.1 | chr5:2155742-2157400 FORWARD LENGTH=331 62 1e-10
AT5G06839.3 | chr5:2120911-2126217 FORWARD LENGTH=461 61 3e-10
>AT5G65210.2 | chr5:26059031-26060749 FORWARD LENGTH=369
Length = 368
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 28 MTSASTQFAAPVRMGAYDRPPPVGMWSHEQFK--VDNGQA-TSASTIMEAEMKFENRL-E 83
M S ST F P R+G Y+ GMW E FK + NG T I+ K +N + E
Sbjct: 1 MNSTSTHFVPPRRVGIYEPVHQFGMWG-ESFKSNISNGTMNTPNHIIIPNNQKLDNNVSE 59
Query: 84 EIPQVVLEEGRNVDQEAS--KPPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
+ DQEAS + PDK+ RRLAQNREAARKSRLRKKAY+QQLETSRLK
Sbjct: 60 DTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116
>AT5G10030.1 | chr5:3137648-3139295 REVERSE LENGTH=365
Length = 364
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 28 MTSASTQFAAPVRMGAYDRPPPVGMWSHEQFKVDNGQATSASTIMEAEMKFENRLEEIPQ 87
M + ST F P R Y+ +GMW E FK + T S I+ K ++ E+
Sbjct: 1 MNTTSTHFVPPRRFEVYEPLNQIGMWE-ESFKNNGDMYTPGSIIIPTNEKPDSLSEDTSH 59
Query: 88 VVLEEGRNVDQEAS--KPPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
DQEAS + PDK+ RRLAQNREAARKSRLRKKAY+QQLETSRLK
Sbjct: 60 GTEGTPHKFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 112
>AT1G77920.1 | chr1:29298959-29300607 FORWARD LENGTH=369
Length = 368
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 73/125 (58%), Gaps = 15/125 (12%)
Query: 28 MTSAS-TQFAAPVRMGAYDRPPPVGMWSHEQFKVD-NGQA--TSASTIMEAEMKFENRLE 83
M+S+S TQ A+ MG Y+ + W + FK D N + T+ S+I++ + + ++
Sbjct: 2 MSSSSPTQLASLRDMGIYEPFQQIVGWGNV-FKSDINDHSPNTATSSIIQVDPRIDDHNN 60
Query: 84 EIP--------QVVLEEGRNVDQ--EASKPPDKVLRRLAQNREAARKSRLRKKAYIQQLE 133
I Q+ E+ + D + + DK+ RRLAQNREAARKSRLRKKAY+QQLE
Sbjct: 61 NIKINYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRRLAQNREAARKSRLRKKAYVQQLE 120
Query: 134 TSRLK 138
SRLK
Sbjct: 121 ESRLK 125
>AT5G06950.1 | chr5:2152323-2154174 FORWARD LENGTH=331
Length = 330
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 34/42 (80%)
Query: 97 DQEASKPPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
D+ K K LRRLAQNREAARKSRLRKKAY+QQLE SRLK
Sbjct: 37 DRSKGKMDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLK 78
>AT3G12250.4 | chr3:3906351-3908583 FORWARD LENGTH=356
Length = 355
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 34/42 (80%)
Query: 97 DQEASKPPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
D+ K K LRRLAQNREAARKSRLRKKAY+QQLE SRLK
Sbjct: 62 DRSKDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLK 103
>AT1G22070.1 | chr1:7789651-7791821 FORWARD LENGTH=385
Length = 384
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 37/44 (84%)
Query: 95 NVDQEASKPPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
N DQ+ + DK+ RRLAQNREAARKSRLRKKA++QQLE SRLK
Sbjct: 87 NNDQDEDRINDKMKRRLAQNREAARKSRLRKKAHVQQLEESRLK 130
>AT1G08320.1 | chr1:2622113-2627451 REVERSE LENGTH=482
Length = 481
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 36/48 (75%)
Query: 91 EEGRNVDQEASKPPDKVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
E+ R + K LRRLAQNREAARKSRLRKKAY+QQLE+SR+K
Sbjct: 163 EDKRKATTSGKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIK 210
>AT1G68640.1 | chr1:25769739-25772303 REVERSE LENGTH=453
Length = 452
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 97 DQEASKPPD-KVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
DQ K D + LRRLAQNREAARKSRLRKKAY+QQLE SR++
Sbjct: 156 DQSNVKSSDQRTLRRLAQNREAARKSRLRKKAYVQQLENSRIR 198
>AT5G06960.1 | chr5:2155742-2157400 FORWARD LENGTH=331
Length = 330
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/33 (90%), Positives = 31/33 (93%)
Query: 106 KVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
K LRRLAQNREAARKSRLRKKAY+QQLE SRLK
Sbjct: 46 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLK 78
>AT5G06839.3 | chr5:2120911-2126217 FORWARD LENGTH=461
Length = 460
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 97 DQEASKPPD-KVLRRLAQNREAARKSRLRKKAYIQQLETSRLK 138
D + K D K LRRLAQNREAARKSRLRKKAY+QQLE+ R+K
Sbjct: 151 DHDIPKSSDPKTLRRLAQNREAARKSRLRKKAYVQQLESCRIK 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.128 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,036,172
Number of extensions: 112849
Number of successful extensions: 809
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 10
Length of query: 155
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 65
Effective length of database: 8,639,129
Effective search space: 561543385
Effective search space used: 561543385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)