BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0613400 Os04g0613400|Os04g0613400
(326 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0613400 Cell differentiation proteins, Rcd1-like famil... 599 e-172
AK063769 476 e-135
Os07g0565200 Similar to RCD1 393 e-109
Os02g0301700 380 e-106
Os02g0296400 Cell differentiation proteins, Rcd1-like famil... 131 7e-31
Os03g0784800 Cell differentiation proteins, Rcd1-like famil... 80 2e-15
>Os04g0613400 Cell differentiation proteins, Rcd1-like family protein
Length = 326
Score = 599 bits (1545), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/326 (91%), Positives = 299/326 (91%)
Query: 1 MANLQPSLXXXXXXXXXXXXXXXXXXXXXXXXXXXQPAKDMKMASAEQLVLDLCDPELRE 60
MANLQPSL QPAKDMKMASAEQLVLDLCDPELRE
Sbjct: 1 MANLQPSLSIPPSFAGASPPSPSPIGGGGVGGGVGQPAKDMKMASAEQLVLDLCDPELRE 60
Query: 61 NALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGASNRVCNALAL 120
NALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGASNRVCNALAL
Sbjct: 61 NALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGASNRVCNALAL 120
Query: 121 LQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVIS 180
LQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVIS
Sbjct: 121 LQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVIS 180
Query: 181 FLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANM 240
FLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANM
Sbjct: 181 FLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANM 240
Query: 241 VVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWL 300
VVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWL
Sbjct: 241 VVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWL 300
Query: 301 QQLLLNVTGAGMGAAPQPGLDHMMGI 326
QQLLLNVTGAGMGAAPQPGLDHMMGI
Sbjct: 301 QQLLLNVTGAGMGAAPQPGLDHMMGI 326
>AK063769
Length = 269
Score = 476 bits (1225), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/269 (86%), Positives = 248/269 (92%)
Query: 58 LRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGASNRVCNA 117
LRENALL+LSKKREIFQDLAPLLWHS+GT+AALLQEIVSIY +LSPPTLSPGASNRVCNA
Sbjct: 1 LRENALLDLSKKREIFQDLAPLLWHSYGTIAALLQEIVSIYPSLSPPTLSPGASNRVCNA 60
Query: 118 LALLQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTE 177
LALLQCVASH +TRI FL AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDD+E
Sbjct: 61 LALLQCVASHSDTRIPFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDSE 120
Query: 178 VISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVL 237
VI FLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAV SVL
Sbjct: 121 VIGFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVASVL 180
Query: 238 ANMVVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTR 297
+ MV +LA+QPS RLLKHIIRCYLRLS+NSRAC AL +CLP+ LKDGT NN L+DD TR
Sbjct: 181 SQMVQALADQPSPRLLKHIIRCYLRLSENSRACTALNSCLPNALKDGTLNNFLQDDHVTR 240
Query: 298 RWLQQLLLNVTGAGMGAAPQPGLDHMMGI 326
RWLQQLL N+T AGMG AP GLDH+MG+
Sbjct: 241 RWLQQLLHNMTMAGMGGAPHGGLDHIMGM 269
>Os07g0565200 Similar to RCD1
Length = 258
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/191 (99%), Positives = 191/191 (100%)
Query: 136 TAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQTEIIPLCLRTM 195
+AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQTEIIPLCLRTM
Sbjct: 68 SAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLQTEIIPLCLRTM 127
Query: 196 EMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANMVVSLAEQPSTRLLKH 255
EMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANMVVSLAEQPSTRLLKH
Sbjct: 128 EMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANMVVSLAEQPSTRLLKH 187
Query: 256 IIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWLQQLLLNVTGAGMGAA 315
IIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWLQQLLLNVTGAGMGAA
Sbjct: 188 IIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWLQQLLLNVTGAGMGAA 247
Query: 316 PQPGLDHMMGI 326
PQPGLDHMMGI
Sbjct: 248 PQPGLDHMMGI 258
>Os02g0301700
Length = 295
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/265 (70%), Positives = 211/265 (79%)
Query: 59 RENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGASNRVCNAL 118
R +AL EL KKRE+F DLAPLLWHSFGT+ LLQEI+ +Y LSPPTLS AS+RVCNAL
Sbjct: 28 RGHALAELRKKREMFPDLAPLLWHSFGTIIVLLQEIIVVYPVLSPPTLSLLASSRVCNAL 87
Query: 119 ALLQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEV 178
ALLQCVASHPETR FL AHIPLYL FL TSKTRPFEYLRLTSLGVIGALVK + TEV
Sbjct: 88 ALLQCVASHPETRSHFLKAHIPLYLCSFLENTSKTRPFEYLRLTSLGVIGALVKAEGTEV 147
Query: 179 ISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLA 238
I+FLLQ E +PLCL M +GSELSKTVATFI++KI+LDD GL YICATA+RFFAVG+ LA
Sbjct: 148 INFLLQYEFVPLCLHAMAVGSELSKTVATFIIEKIVLDDAGLGYICATADRFFAVGTALA 207
Query: 239 NMVVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRR 298
MV S+ ++PS RLLKHII CYLR++DN R ALQTCLP L DGTFNN +DDPT ++
Sbjct: 208 GMVTSMDDKPSPRLLKHIIHCYLRITDNPRGLEALQTCLPTTLIDGTFNNLTKDDPTMQQ 267
Query: 299 WLQQLLLNVTGAGMGAAPQPGLDHM 323
WLQ+LL+ V MG P P HM
Sbjct: 268 WLQELLVKVRSGKMGGLPPPVQGHM 292
>Os02g0296400 Cell differentiation proteins, Rcd1-like family protein
Length = 112
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 76/91 (83%)
Query: 47 EQLVLDLCDPELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTL 106
E+L+LDL DPEL+ +A EL KKRE+FQ+LA LLW+SFG VA+LLQEI+ +Y ALSPPTL
Sbjct: 16 ERLILDLLDPELKRHAPSELRKKREMFQNLALLLWNSFGIVASLLQEIIVVYPALSPPTL 75
Query: 107 SPGASNRVCNALALLQCVASHPETRILFLTA 137
S GASNRVCNALALLQC+ASH ETR FL
Sbjct: 76 SLGASNRVCNALALLQCIASHSETRTHFLQG 106
>Os03g0784800 Cell differentiation proteins, Rcd1-like family protein
Length = 107
Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 38/38 (100%)
Query: 136 TAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV 173
+AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV
Sbjct: 38 SAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV 75
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,632,519
Number of extensions: 360576
Number of successful extensions: 1039
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 225
Effective length of database: 11,762,187
Effective search space: 2646492075
Effective search space used: 2646492075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)