Os07g0565200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RCD1.
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Os07g0565200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RCD1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.53 | 0.264 | 10.7 | -0.00415 | 0.297 | -0.979 | 0.0884 | -0.82 | 0.328 | 3.16 | 25.11 | 27 | -- | -- |
| 32.34 | 0.267 | 10.7 | -0.13 | 0.374 | -0.915 | -0.151 | -- | 0.285 | 3.17 | 27.22 | 19 | -- | -- |
| 31.54 | 0.262 | 10.7 | -0.0125 | 0.297 | -0.973 | -- | -0.76 | 0.326 | 3.2 | 25.13 | 26 | -- | -- |
| 32.38 | 0.265 | 10.7 | -0.134 | 0.378 | -0.929 | -- | -- | 0.281 | 3.24 | 27.26 | 19 | -- | -- |
| 34.58 | 0.274 | 10.7 | 0.00553 | -- | -1.03 | -- | -0.949 | 0.378 | -- | 23.32 | 312 | -- | -- |
| 44.58 | 0.313 | 10.7 | 0.0904 | 0.144 | -- | -0.239 | -- | 0.485 | 5.28 | -- | -- | -- | -- |
| 44.72 | 0.313 | 10.7 | 0.0903 | 0.143 | -- | -- | -- | 0.486 | 5.54 | -- | -- | -- | -- |
| 35.64 | 0.278 | 10.7 | -0.115 | -- | -0.87 | -- | -- | 0.347 | -- | 23.83 | 402 | -- | -- |
| 32.8 | 0.268 | 10.7 | -- | 0.359 | -0.869 | -- | -- | 0.309 | 3.2 | 27.26 | 19 | -- | -- |
| 45.79 | 0.316 | 10.7 | 0.095 | -- | -- | -- | -- | 0.489 | -- | -- | -- | -- | -- |
| 44.94 | 0.314 | 10.7 | -- | 0.145 | -- | -- | -- | 0.476 | 5.51 | -- | -- | -- | -- |
| 35.94 | 0.279 | 10.7 | -- | -- | -0.821 | -- | -- | 0.367 | -- | 23.8 | 312 | -- | -- |
| 46.03 | 0.317 | 10.7 | -- | -- | -- | -- | -- | 0.479 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.69 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 30.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 31.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 31.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 6 | 31.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 7 | 31.20 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 10 | 31.43 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 12 | 31.53 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 13 | 31.54 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 14 | 31.54 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 15 | 31.54 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 16 | 31.55 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 18 | 31.56 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 19 | 31.57 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 20 | 31.57 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 21 | 31.58 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 22 | 31.60 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 24 | 31.61 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 26 | 31.64 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 37 | 31.70 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 61 | 31.88 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 66 | 31.89 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 120 | 32.12 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 128 | 32.14 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 153 | 32.23 | temperature | 25.0 | 720 | < th | dose dependent | sin | 16 | NA |
| 253 | 32.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 314 | 32.64 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 371 | 32.80 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 410 | 32.89 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 420 | 32.91 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 430 | 32.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 431 | 32.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 443 | 32.96 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 551 | 33.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 553 | 33.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 589 | 33.27 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 652 | 33.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 653 | 33.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 654 | 33.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 687 | 33.46 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 749 | 33.60 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 775 | 33.65 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 776 | 33.65 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 777 | 33.65 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 778 | 33.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 781 | 33.66 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 798 | 33.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 817 | 33.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 819 | 33.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 830 | 33.73 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 843 | 33.75 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 854 | 33.76 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 5 |
| 862 | 33.77 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 909 | 33.83 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 993 | 33.95 | temperature | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |