Os04g0613400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cell differentiation proteins, Rcd1-like family protein.
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Os04g0613400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cell differentiation proteins, Rcd1-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.8 | 0.252 | 8.44 | -0.0423 | 0.478 | -1.11 | 0.537 | -0.471 | 0.17 | 12.4 | 23.92 | 1020 | -- | -- |
| 29.12 | 0.251 | 8.44 | -0.0591 | 0.482 | -1 | 0.449 | -- | 0.177 | 12.3 | 24 | 1003 | -- | -- |
| 29.9 | 0.255 | 8.44 | -0.0703 | 0.481 | -1.08 | -- | -0.156 | 0.166 | 12.2 | 23.89 | 987 | -- | -- |
| 29.92 | 0.255 | 8.45 | -0.0949 | 0.482 | -1.05 | -- | -- | 0.158 | 12.2 | 23.99 | 983 | -- | -- |
| 36.21 | 0.28 | 8.44 | 0.0206 | -- | -1.09 | -- | -0.205 | 0.213 | -- | 47.46 | 9 | -- | -- |
| 43.9 | 0.311 | 8.41 | 0.185 | 0.366 | -- | 0.522 | -- | 0.355 | 12.5 | -- | -- | -- | -- |
| 45.05 | 0.314 | 8.4 | 0.205 | 0.364 | -- | -- | -- | 0.357 | 12.3 | -- | -- | -- | -- |
| 35.78 | 0.279 | 8.45 | -0.0157 | -- | -0.938 | -- | -- | 0.18 | -- | 30.24 | 10 | -- | -- |
| 30.13 | 0.256 | 8.44 | -- | 0.476 | -1.02 | -- | -- | 0.172 | 12.1 | 24 | 976 | -- | -- |
| 53.4 | 0.341 | 8.41 | 0.193 | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
| 46.15 | 0.318 | 8.41 | -- | 0.362 | -- | -- | -- | 0.335 | 12.3 | -- | -- | -- | -- |
| 35.78 | 0.279 | 8.45 | -- | -- | -0.934 | -- | -- | 0.183 | -- | 30.26 | 9 | -- | -- |
| 54.38 | 0.344 | 8.42 | -- | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 16 |
| 8 | 28.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 12 | 28.32 | temperature | 25 | 720 | < th | dose dependent | sin | 2 | NA |
| 13 | 28.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 17 | 28.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 21 | 28.42 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 36 | 28.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 161 | 29.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 245 | 29.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 275 | 29.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 289 | 30.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 292 | 30.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 325 | 30.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 328 | 30.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 349 | 30.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 360 | 30.25 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 374 | 30.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 462 | 30.42 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 496 | 30.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 506 | 30.48 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 588 | 30.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 737 | 30.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 847 | 31.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 869 | 31.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |