BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0613400 Os04g0613400|Os04g0613400
(326 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20800.1 | chr3:7271412-7273897 REVERSE LENGTH=317 479 e-135
AT5G12980.1 | chr5:4105562-4108139 REVERSE LENGTH=312 451 e-127
AT2G32550.1 | chr2:13819406-13822600 FORWARD LENGTH=323 150 6e-37
>AT3G20800.1 | chr3:7271412-7273897 REVERSE LENGTH=317
Length = 316
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/289 (81%), Positives = 256/289 (88%), Gaps = 6/289 (2%)
Query: 39 KDMKMASAEQLVLDLCDPELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIY 98
KD +ASAEQLVLDL +PELRENALLELSKKRE+FQDLAPLLW+SFGT+AALLQEIVSIY
Sbjct: 31 KDRNLASAEQLVLDLSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIY 90
Query: 99 SALSPPTLSPGASNRVCNALALLQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEY 158
S L+PP L+P SNRVCN+LALLQCVASH +TR+LFL AHIPLYLYPFLNTTSK+RPFEY
Sbjct: 91 SVLAPPNLTPAQSNRVCNSLALLQCVASHSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEY 150
Query: 159 LRLTSLGVIGALVKVDDTEVISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDV 218
LRLTSLGVIGALVKVDDTEVISFLL TEIIPLCLRTMEMGSELSKTVATFIVQKILLDDV
Sbjct: 151 LRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDV 210
Query: 219 GLRYICATAERFFAVGSVLANMVVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLP 278
G+ YIC TAERFFAVG VL NMV SL EQPS RLLKHIIRCYLRLSDN RACAAL +CLP
Sbjct: 211 GMDYICTTAERFFAVGRVLGNMVQSLVEQPSPRLLKHIIRCYLRLSDNPRACAALASCLP 270
Query: 279 DMLKDGTFNNCLRDDPTTRRWLQQLLLNVTGAGMGAAPQ---PGLDHMM 324
D L+DG+F+NCLR+DPT RRWLQQL+ NV G+G P G +HM+
Sbjct: 271 DSLRDGSFSNCLREDPTARRWLQQLVHNV---GVGRVPTHQGGGFEHML 316
>AT5G12980.1 | chr5:4105562-4108139 REVERSE LENGTH=312
Length = 311
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/286 (77%), Positives = 246/286 (86%), Gaps = 3/286 (1%)
Query: 39 KDMKMASAEQLVLDLCDPELRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIY 98
D K++SAEQL+LDL +PELRENAL ELSKKREIFQDLAPLLWHS GT+ ALLQEI+++Y
Sbjct: 27 NDRKLSSAEQLILDLSNPELRENALHELSKKREIFQDLAPLLWHSVGTIPALLQEIIAVY 86
Query: 99 SALSPPTLSPGASNRVCNALALLQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEY 158
ALSPPT++P SNRVCNALALLQCVASH +TR+LFL AH+PLYLY FLNT+SK+RPFEY
Sbjct: 87 PALSPPTMTPAQSNRVCNALALLQCVASHTDTRMLFLKAHLPLYLYAFLNTSSKSRPFEY 146
Query: 159 LRLTSLGVIGALVKVDDTEVISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDV 218
LRLTSLGVIGALVKVDDTEVI FLLQTEI+PLCLRTME GSELSKTVATFIVQK+LLDDV
Sbjct: 147 LRLTSLGVIGALVKVDDTEVIRFLLQTEIVPLCLRTMENGSELSKTVATFIVQKVLLDDV 206
Query: 219 GLRYICATAERFFAVGSVLANMVVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLP 278
GL Y+C TAERFFA+G VL NMV SLAE PS RLLKHIIRCYLRL+DN RAC AL +CLP
Sbjct: 207 GLEYMCTTAERFFALGRVLGNMVTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCLP 266
Query: 279 DMLKDGTFNNCLRDDPTTRRWLQQLLLNVTGAGMGAAPQPGLDHMM 324
D+L+D TF+ CL DDP +WLQQLL NV G APQ GL HM
Sbjct: 267 DLLRDATFSGCLYDDPPAMQWLQQLLHNVNVG--GRAPQ-GLAHMF 309
>AT2G32550.1 | chr2:13819406-13822600 FORWARD LENGTH=323
Length = 322
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 146/273 (53%), Gaps = 16/273 (5%)
Query: 48 QLVLDLCDPE--LRENALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALS--- 102
Q V D+ P+ + + AL L+ R F+ L LLW S TV +LQE+ Y L+
Sbjct: 51 QWVCDIHKPKSYMSDFALHNLAYHRNDFEFLPSLLWESKNTVYIMLQEVFEAYRHLAGHI 110
Query: 103 -----PPTLSPGASNRVCNALALLQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFE 157
P L+P RV N L Q +A HP+T FL A +P Y YP ++T + E
Sbjct: 111 SLRLFPHPLNPL---RVYNVFLLFQSMACHPDTSRQFLRAKMPNYFYPLMDTGLIDKSDE 167
Query: 158 YLRLTSLGVIGALVKV-DDTEVISFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLD 216
+RL +LGVI ++K +D V +L+++ ++ C++ +E GS +K VA +I+ KI+
Sbjct: 168 CMRLAALGVIAHMLKASEDGAVNRYLMESGVVGFCVKPIEFGSTETKKVALYILDKIMST 227
Query: 217 DVGLRYICATAERFFAVGSVLANMVVSLAE--QPSTRLLKHIIRCYLRLSDNSRACAALQ 274
D GL Y C A+RF+ + +L ++ L+ +P + L + CY++LS NSRA ++
Sbjct: 228 DQGLYYCCVLADRFYVIDELLKKVLFYLSNMVRPPSSLFSLVTGCYVKLSQNSRARNGIR 287
Query: 275 TCLPDMLKDGTFNNCLRDDPTTRRWLQQLLLNV 307
P +L DGTF+ +DP QLL N+
Sbjct: 288 RYTPFLLFDGTFSRLYAEDPVAANNRIQLLQNL 320
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,125,642
Number of extensions: 230467
Number of successful extensions: 696
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 3
Length of query: 326
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 227
Effective length of database: 8,392,385
Effective search space: 1905071395
Effective search space used: 1905071395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 112 (47.8 bits)