Os03g0784800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cell differentiation proteins, Rcd1-like family protein.
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Os03g0784800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cell differentiation proteins, Rcd1-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.29 | 0.22 | 13.5 | 2.47 | 0.411 | 99.1 | -0.61 | 211 | 0.47 | 21.5 | 15 | 90 | -- | -- |
| 22.66 | 0.223 | 12.9 | 1.4 | 0.417 | -0.95 | -0.657 | -- | 0.475 | 21.6 | 15 | 90 | -- | -- |
| 23.61 | 0.226 | 13.5 | 2.53 | 0.41 | 99.3 | -- | 211 | 0.47 | 21.6 | 15.04 | 89 | -- | -- |
| 23.6 | 0.226 | 12.9 | 1.4 | 0.409 | -0.823 | -- | -- | 0.47 | 21.6 | 16 | 69 | -- | -- |
| 33.36 | 0.269 | 13.5 | 2.66 | -- | 99.5 | -- | 211 | 0.469 | -- | 15.19 | 90 | -- | -- |
| 24.36 | 0.231 | 12.9 | 1.44 | 0.404 | -- | -0.56 | -- | 0.485 | 21.5 | -- | -- | -- | -- |
| 25.5 | 0.236 | 12.9 | 1.46 | 0.406 | -- | -- | -- | 0.485 | 21.6 | -- | -- | -- | -- |
| 31.46 | 0.261 | 12.9 | 1.32 | -- | -0.572 | -- | -- | 0.407 | -- | 22.12 | 776 | -- | -- |
| 35.99 | 0.279 | 13 | -- | 0.395 | -1.12 | -- | -- | 0.0545 | 21.5 | 22.1 | 47520 | -- | -- |
| 35.24 | 0.277 | 12.9 | 1.46 | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
| 81.62 | 0.423 | 13 | -- | 0.409 | -- | -- | -- | 0.323 | 21.9 | -- | -- | -- | -- |
| 45.18 | 0.313 | 13 | -- | -- | -1.12 | -- | -- | 0.0494 | -- | 22.2 | 47520 | -- | -- |
| 91.66 | 0.447 | 13 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.58 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 2 | 21.63 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 15 |
| 4 | 21.69 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 23 |
| 6 | 21.70 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 7 | 21.73 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 9 | 21.77 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 22 |
| 11 | 21.78 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 15 |
| 12 | 21.79 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 14 | 21.79 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 20 | 21.83 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 22 |
| 24 | 21.84 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 23 |
| 25 | 21.84 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 0 | NA |
| 44 | 21.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 52 | 21.94 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 70 | 21.97 | temperature | 15.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 71 | 21.97 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 72 | 21.97 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 77 | 21.98 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 88 | 22.01 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 0 | NA |
| 89 | 22.01 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 90 | 22.01 | temperature | 15.0 | 720 | > th | dose independent | rect. | 9 | 15 |
| 91 | 22.01 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 16 |
| 93 | 22.01 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 94 | 22.02 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 0 | NA |
| 107 | 22.03 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 132 | 22.05 | temperature | 20.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 139 | 22.06 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 174 | 22.11 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 188 | 22.12 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 205 | 22.13 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 20 |
| 208 | 22.13 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 10 |
| 217 | 22.13 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 20 |
| 251 | 22.16 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 258 | 22.17 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 260 | 22.17 | temperature | 15.0 | 720 | > th | dose independent | rect. | 12 | 9 |
| 270 | 22.17 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 271 | 22.17 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 275 | 22.18 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 3 |
| 288 | 22.18 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 343 | 22.21 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 353 | 22.21 | atmosphere | 1005.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 355 | 22.21 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 363 | 22.21 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 368 | 22.22 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 403 | 22.24 | temperature | 15.0 | 90 | > th | dose independent | sin | 8 | NA |
| 405 | 22.24 | temperature | 15.0 | 90 | > th | dose independent | sin | 18 | NA |
| 406 | 22.24 | temperature | 15.0 | 270 | > th | dose independent | sin | 5 | NA |
| 413 | 22.24 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 420 | 22.24 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 23 |
| 427 | 22.24 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 10 |
| 434 | 22.25 | temperature | 15.0 | 720 | > th | dose independent | sin | 22 | NA |
| 436 | 22.25 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 439 | 22.25 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 447 | 22.25 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 460 | 22.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 470 | 22.25 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 14 |
| 471 | 22.25 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 479 | 22.26 | temperature | 15.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 480 | 22.26 | temperature | 15.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 484 | 22.26 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 522 | 22.27 | temperature | 15.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 535 | 22.27 | temperature | 15.0 | 720 | < th | dose independent | rect. | 10 | 14 |
| 581 | 22.28 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 597 | 22.28 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 600 | 22.28 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 608 | 22.28 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 22 | 4 |
| 616 | 22.28 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 11 |
| 628 | 22.28 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 6 | 20 |
| 632 | 22.29 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 634 | 22.29 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 688 | 22.29 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 690 | 22.29 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 692 | 22.29 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 695 | 22.29 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 831 | 22.29 | temperature | 15.0 | 270 | < th | dose independent | rect. | 24 | 10 |