BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0784800 Os03g0784800|J065099H20
(107 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0784800 Cell differentiation proteins, Rcd1-like famil... 193 2e-50
Os07g0565200 Similar to RCD1 81 2e-16
Os04g0613400 Cell differentiation proteins, Rcd1-like famil... 80 2e-16
AK063769 80 3e-16
Os02g0301700 67 2e-12
>Os03g0784800 Cell differentiation proteins, Rcd1-like family protein
Length = 107
Score = 193 bits (491), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/107 (89%), Positives = 96/107 (89%)
Query: 1 SHLVSFAHRNVHLYVALCFQLAIVSDXXXXXXXXXXXSAHIPLYLYPFLNTTSKTRPFEY 60
SHLVSFAHRNVHLYVALCFQLAIVSD SAHIPLYLYPFLNTTSKTRPFEY
Sbjct: 1 SHLVSFAHRNVHLYVALCFQLAIVSDLFPLLIFPFFFSAHIPLYLYPFLNTTSKTRPFEY 60
Query: 61 LRLTSLGVIGALVKVIASQNFMKIMRDMGVFLEWKRRFLKLDHFLIY 107
LRLTSLGVIGALVKVIASQNFMKIMRDMGVFLEWKRRFLKLDHFLIY
Sbjct: 61 LRLTSLGVIGALVKVIASQNFMKIMRDMGVFLEWKRRFLKLDHFLIY 107
>Os07g0565200 Similar to RCD1
Length = 258
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 38 SAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV 75
SAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV
Sbjct: 68 SAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV 105
>Os04g0613400 Cell differentiation proteins, Rcd1-like family protein
Length = 326
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/38 (97%), Positives = 38/38 (100%)
Query: 38 SAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV 75
+AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV
Sbjct: 136 TAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV 173
>AK063769
Length = 269
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 38 SAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVIASQ 79
+AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKV S+
Sbjct: 79 NAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDSE 120
>Os02g0301700
Length = 295
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 2/46 (4%)
Query: 39 AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVIASQ--NFM 82
AHIPLYL FL TSKTRPFEYLRLTSLGVIGALVK ++ NF+
Sbjct: 106 AHIPLYLCSFLENTSKTRPFEYLRLTSLGVIGALVKAEGTEVINFL 151
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.333 0.144 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,674,716
Number of extensions: 70970
Number of successful extensions: 177
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 5
Length of query: 107
Length of database: 17,035,801
Length adjustment: 75
Effective length of query: 32
Effective length of database: 13,119,751
Effective search space: 419832032
Effective search space used: 419832032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 149 (62.0 bits)