BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0608600 Os04g0608600|AK067687
(200 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0608600 Thioredoxin domain 2 containing protein 423 e-119
Os03g0405500 Similar to PDI-like protein 178 2e-45
Os03g0405900 Thioredoxin-like domain containing protein 176 8e-45
Os01g0794400 Thioredoxin domain 2 containing protein 164 3e-41
>Os04g0608600 Thioredoxin domain 2 containing protein
Length = 200
Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 LFQTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEE 60
LFQTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEE
Sbjct: 1 LFQTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEE 60
Query: 61 EFQASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAM 120
EFQASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAM
Sbjct: 61 EFQASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAM 120
Query: 121 AFPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKAYVCDECQQKGQNWVFSC 180
AFPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKAYVCDECQQKGQNWVFSC
Sbjct: 121 AFPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKAYVCDECQQKGQNWVFSC 180
Query: 181 KQCNFDLHPTCAQESTDVNI 200
KQCNFDLHPTCAQESTDVNI
Sbjct: 181 KQCNFDLHPTCAQESTDVNI 200
>Os03g0405500 Similar to PDI-like protein
Length = 569
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 119/191 (62%), Gaps = 2/191 (1%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
+ P+S+L GKT+ LYF A WC PCRAF +L + Y+++K + +F++IFIS DR++ +
Sbjct: 351 KVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKE-KHNDFEIIFISSDRDQSSY 409
Query: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAF 122
S MPW A+P D Q LS+ F ++GIP+L+ +G DG+ D + ++ +GA AF
Sbjct: 410 DEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAF 469
Query: 123 PFTESRAYELEEVLKKERDSLPHRVRDHRH-EHELELDMAKAYVCDECQQKGQNWVFSCK 181
PFTE R E+E + + P +++ H EHEL L Y CD C + G +W + C+
Sbjct: 470 PFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCR 529
Query: 182 QCNFDLHPTCA 192
+C+FDLHP CA
Sbjct: 530 ECDFDLHPKCA 540
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Q IS + T+ LYF A WCPPCR FT +L EAY+EL + + NF+V+F+S D+++E F
Sbjct: 26 QVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNELVS-QGKNFEVVFVSGDKDQEAF 84
Query: 63 QASLSAMPWFAIPYSDTTVQ-ELSRIFTIKGIPTLLIL-GPDGKVFKTDGRRIISKYGAM 120
A + MPW A+P+SD+ + +L++ F ++GIP L+IL G+V+ DG +++ +G
Sbjct: 85 DAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVILNATSGEVYTEDGVELVTVHGTE 144
Query: 121 AFPFTESRAYELEEVLKKERDS 142
A+PFT R EL+E K +D+
Sbjct: 145 AYPFTTERINELKEQEKAAKDN 166
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
+ PISDL GK +GL F + P FT L + Y++LK + F+V+ +S+D +EE
Sbjct: 188 RVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGE-KFEVVAVSLDSDEELS 246
Query: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA- 121
S + MPW AIP D ++L+R F ++G+PTL+++GPDGK + II ++G A
Sbjct: 247 NESFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDAW 306
Query: 122 --FPFTESRAYELEEVLK 137
FPFT + L E K
Sbjct: 307 EGFPFTAEKMEILAEKAK 324
>Os03g0405900 Thioredoxin-like domain containing protein
Length = 413
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 128/203 (63%), Gaps = 6/203 (2%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
+ P+S+L GKT+ LYF A WCPPCRAF +L Y+++K + +F+++FIS DR + +
Sbjct: 190 KVPVSELVGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIKE-KHNDFEIVFISSDREQSSY 248
Query: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAF 122
S MPW A+P D Q+LS+IF I GIP+L+ +GPDGK D + + +GA AF
Sbjct: 249 DEFFSGMPWLALPLGDERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADAF 308
Query: 123 PFTESRAYELEEVLKKERDSL----PHRVRDHRHEHELELDMAKAYVCDECQQKGQNWVF 178
PFTE + ELE+ +K+ + + P +++ H+HEL L Y CD C + G +W +
Sbjct: 309 PFTEEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLTRCTTYGCDGCDEMGDSWSY 368
Query: 179 SCKQCNFDLHPTCA-QESTDVNI 200
CK+C+FDLHP CA +E DV +
Sbjct: 369 RCKECDFDLHPKCALEEKGDVEM 391
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Q PISDL GK +GL F + P FT L + Y++LKA+ F+V+ +S+D +EE F
Sbjct: 27 QVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGE-KFEVVMVSLDGDEESF 85
Query: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA- 121
S + MPW AIP D ++L+R F + G+P L+++GPDGK D II ++G A
Sbjct: 86 NESFADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIGPDGKTLNDDIADIIDEHGPDAW 145
Query: 122 --FPFTESRAYELEEVLKKERDS 142
FPF+ + L E K + +S
Sbjct: 146 EGFPFSAEKLEILAEKAKAKAES 168
>Os01g0794400 Thioredoxin domain 2 containing protein
Length = 394
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 6/197 (3%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Q PIS L GKT+GLYF AH C PC FT +L Y LK + +F++I+I MD+ E+ +
Sbjct: 193 QVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKG-KAEDFEIIYIPMDKEEDGY 251
Query: 63 QASLSAMPWFAIPYSD-TTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA 121
S S MPW A+PY D + L+R F ++ IPTL+++GPDGK +GR +++ Y MA
Sbjct: 252 LRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMA 311
Query: 122 FPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKA----YVCDECQQKGQNWV 177
FPFT+ + L+E+ ++ P +R H HEL + K+ Y+C EC ++G W
Sbjct: 312 FPFTDEQIRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWA 371
Query: 178 FSCKQCNFDLHPTCAQE 194
+ C C +++H C ++
Sbjct: 372 YQCIACGYEIHLRCGRD 388
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
+ IS+L GK IGLYF A+W P C AFT L AY +LK G F+VIF+S D N F
Sbjct: 33 EVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAG-FEVIFVSCDENRPSF 91
Query: 63 QASLSAMPWFAIPYSDTTVQE-LSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA 121
+ AMPW A+P+ D ++ LS F ++GIP L++L P+G+V + D ++ +YG A
Sbjct: 92 ERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVHRYGDRA 151
Query: 122 FPFTESRAYELE 133
FPFT +R ELE
Sbjct: 152 FPFTSARVAELE 163
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,909,699
Number of extensions: 268507
Number of successful extensions: 760
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 747
Number of HSP's successfully gapped: 8
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)