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Os04g0608600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin domain 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.02 (0.0552) R2 : 0.74
β1 : -1.04 (0.257) R2dD : 0.0181 R2D : 0.0994
β2 : 3.28 (0.124) R2dC : 0.407 R2C : 0.344
β3 : -3.1 (0.192) R2dE : 0.326 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.834 (0.138) R2dN8 : 0.0436 R2N8 : -0.0377
σ : 0.972
deviance : 435.81
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C
peak time of C : 24
E
wheather : temperature
threshold : 25.7
memory length : 16835
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.1
open length of G : 2.27

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
422.53 0.966 8.07 -1.46 3.27 -2.95 2.33 -1.07 0.829 0.0452 25.4 16916 9.9 1.18
417.44 0.952 8.07 -1.19 3.34 -2.87 2.36 -- 0.706 0.0909 25.62 16925 10 2.4
436.98 0.974 8.05 -1.38 3.27 -2.98 -- -0.658 0.791 0.00138 25.7 16835 10.1 1.52
435.81 0.972 8.02 -1.04 3.28 -3.1 -- -- 0.834 24 25.7 16835 10.1 2.27
1041.22 1.5 8.03 -1.1 -- -3.03 -- -0.426 0.769 -- 25.8 16277 10.3 1.42
670.03 1.21 8.32 -3.76 3.14 -- 2.03 -- -0.495 0.167 -- -- -- --
687.8 1.23 8.32 -3.84 3.13 -- -- -- -0.504 0.163 -- -- -- --
1041.48 1.5 8.03 -0.894 -- -3.2 -- -- 0.775 -- 25.8 16273 10.6 1.27
459.07 0.998 8.03 -- 3.33 -3.17 -- -- 0.871 23.8 26.12 16922 10.4 1.87
1305.42 1.69 8.26 -3.74 -- -- -- -- -0.458 -- -- -- -- --
1077.19 1.54 8.23 -- 3.08 -- -- -- -0.076 0.0949 -- -- -- --
1034.47 1.5 8.03 -- -- -3.65 -- -- 0.62 -- 25.89 16267 11.3 0.0389
1674.91 1.91 8.17 -- -- -- -- -- -0.0423 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.73 temperature 25 14400 > th dose independent rect. 10 1
2 444.50 temperature 25 14400 < th dose independent rect. 10 1
4 447.05 temperature 25 14400 > th dose independent rect. 7 6
11 448.22 temperature 25 14400 > th dose independent rect. 8 1
13 448.39 temperature 25 14400 < th dose independent rect. 8 1
14 448.40 temperature 25 14400 < th dose independent rect. 7 6
21 449.27 temperature 25 14400 > th dose dependent rect. 13 1
60 452.56 humidity 80 43200 > th dose dependent rect. 11 1
117 455.57 temperature 25 14400 > th dose independent sin 2 NA
168 457.11 temperature 25 14400 < th dose independent sin 1 NA
173 457.25 temperature 25 14400 > th dose independent rect. 10 10
202 457.79 humidity 70 14400 < th dose independent rect. 18 1
215 458.01 temperature 30 14400 < th dose independent rect. 14 1
225 458.20 temperature 25 14400 < th dose independent rect. 10 9
247 458.77 temperature 30 14400 < th dose dependent rect. 13 1
291 459.72 humidity 80 43200 > th dose independent rect. 12 1
312 460.08 humidity 90 43200 < th dose independent rect. 16 13
330 460.37 humidity 90 43200 < th dose independent rect. 14 15
359 460.69 temperature 20 14400 > th dose dependent rect. 8 1
373 460.83 temperature 25 14400 > th dose dependent sin 0 NA
494 462.54 humidity 90 43200 > th dose independent rect. 13 16
544 463.00 humidity 90 43200 < th dose independent rect. 10 1
557 463.13 temperature 25 14400 > th dose independent rect. 17 1
570 463.23 temperature 25 14400 < th dose independent rect. 17 1
657 463.82 radiation 1 1440 < th dose dependent rect. 18 23
770 464.63 temperature 25 14400 > th dose independent rect. 17 22
908 465.39 temperature 25 14400 > th dose independent rect. 19 20
998 465.82 humidity 90 43200 < th dose independent sin 12 NA
999 465.83 temperature 25 14400 > th dose independent no NA NA