BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0608600 Os04g0608600|AK067687
(200 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31240.1 | chr4:15176637-15177986 REVERSE LENGTH=393 250 4e-67
AT1G60420.1 | chr1:22261978-22264243 FORWARD LENGTH=579 183 5e-47
>AT4G31240.1 | chr4:15176637-15177986 REVERSE LENGTH=393
Length = 392
Score = 250 bits (638), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 110/189 (58%), Positives = 143/189 (75%)
Query: 6 ISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEFQAS 65
+S L GKTIGLYFGAHWCPP R+FT QL + Y+EL G+F+VI IS DR+ EF +
Sbjct: 198 VSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSREFNIN 257
Query: 66 LSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFT 125
++ MPW AIPY D T Q+L RIF +K IP L+I+GP+ K T+ R ++S YG+ +FPFT
Sbjct: 258 MTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSRSFPFT 317
Query: 126 ESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKAYVCDECQQKGQNWVFSCKQCNF 185
ESR EL+ LKKE DSLP +V+D++HEHEL+LDMAKAYVCD C+++G+ W FSC C++
Sbjct: 318 ESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDFCKKQGRFWAFSCNACDY 377
Query: 186 DLHPTCAQE 194
DLHPTC +E
Sbjct: 378 DLHPTCVEE 386
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
+ P+ ++GKTI L+F A WC PC+ FT +L + Y+ L+ R ++IF+S D + F
Sbjct: 35 EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQN-RGEELEIIFVSFDHDMTSF 93
Query: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAF 122
MPW A+P++ + + +L + I IP+L+ L D D +I YG+ AF
Sbjct: 94 YEHFWCMPWLAVPFNLSLLNKLRDKYGISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAF 153
Query: 123 PFTESRAYELEEVLKKER 140
PFT+ R EL+ + +R
Sbjct: 154 PFTKKRKEELKAIDDSKR 171
>AT1G60420.1 | chr1:22261978-22264243 FORWARD LENGTH=579
Length = 578
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 6 ISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEFQAS 65
+SDL GKTI +YF AHWCPPCRAFT +L E Y ++K R F++IFIS DR++E F
Sbjct: 358 VSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKE-RNEAFELIFISSDRDQESFDEY 416
Query: 66 LSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAFPFT 125
S MPW A+P+ D L++ F + GIP L LGP G+ + R ++ +GA A+PFT
Sbjct: 417 YSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFT 476
Query: 126 ESRAYELEEVLKKERDSLPHRVRDHRH-EHELELDMAKAYVCDECQQKGQNWVFSCKQCN 184
E R E+E + P +V+ H EHELEL + Y CD+C+++G W + C +C+
Sbjct: 477 EERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECD 536
Query: 185 FDLHPTCA 192
FDLH CA
Sbjct: 537 FDLHAKCA 544
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Q + L GK IGLYF A WC PC+ FT QL E Y+EL + F+++F+S D +EE F
Sbjct: 35 QVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLVEVYNELSS--KVGFEIVFVSGDEDEESF 92
Query: 63 QASLSAMPWFAIPYSDT-TVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA 121
MPW A+P++D+ T L +F ++GIP L+++ GK+ +G +I YGA A
Sbjct: 93 GDYFRKMPWLAVPFTDSETRDRLDELFKVRGIPNLVMVDDHGKLVNENGVGVIRSYGADA 152
Query: 122 FPFTESRAYELEE 134
+PFT + E++E
Sbjct: 153 YPFTPEKMKEIKE 165
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
+ P+S+L GKTIGL F C T +L E Y +LK + +F+++ IS++ +EE F
Sbjct: 195 KVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKE-DFEIVLISLEDDEESF 253
Query: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAF 122
PW A+P++D + +L+R F + +PTL+ILGPDGK ++ I YG +A+
Sbjct: 254 NQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTRHSNVAEAIDDYGVLAY 313
Query: 123 PFTESRAYELEEV--LKKERDSLPHRVRDHRHEHELELDMAKAYVCD 167
PFT + EL+E+ K E +L + + L D AK V D
Sbjct: 314 PFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSD 360
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,507,381
Number of extensions: 181372
Number of successful extensions: 1079
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1093
Number of HSP's successfully gapped: 5
Length of query: 200
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 106
Effective length of database: 8,529,465
Effective search space: 904123290
Effective search space used: 904123290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)