Os03g0405500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PDI-like protein.
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Os03g0405500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PDI-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.23 | 0.707 | 10.3 | 3.08 | 0.00656 | 1.12 | 4.92 | -6.85 | 1.12 | 0.913 | 24.8 | 85 | 7.16 | -- |
| 269.22 | 0.77 | 10.4 | 1.92 | 0.0971 | 0.884 | -1.65 | -- | 0.723 | 22.3 | 24.8 | 85 | 7.16 | -- |
| 242.53 | 0.725 | 10.4 | 2.5 | 0.421 | 0.763 | -- | -3.06 | 0.823 | 1.86 | 24.4 | 9 | 8.69 | -- |
| 263.39 | 0.756 | 10.4 | 1.98 | 0.0513 | 1.12 | -- | -- | 0.786 | 21.6 | 25.5 | 164 | 8.21 | -- |
| 243.12 | 0.726 | 10.4 | 2.31 | -- | 1.11 | -- | -2.77 | 0.854 | -- | 25.1 | 115 | 8.11 | -- |
| 288.42 | 0.796 | 10.5 | 1.82 | 0.783 | -- | -1.43 | -- | 0.454 | 0.527 | -- | -- | -- | -- |
| 296.59 | 0.806 | 10.5 | 1.87 | 0.796 | -- | -- | -- | 0.459 | 1.02 | -- | -- | -- | -- |
| 263.27 | 0.756 | 10.4 | 1.98 | -- | 1.13 | -- | -- | 0.756 | -- | 25.56 | 163 | 8.2 | -- |
| 366.51 | 0.892 | 10.4 | -- | 0.161 | 1.11 | -- | -- | 0.58 | 18.2 | 25.6 | 155 | 7.31 | -- |
| 335.96 | 0.856 | 10.5 | 1.9 | -- | -- | -- | -- | 0.475 | -- | -- | -- | -- | -- |
| 388.74 | 0.922 | 10.5 | -- | 0.827 | -- | -- | -- | 0.251 | 1.12 | -- | -- | -- | -- |
| 365.77 | 0.891 | 10.5 | -- | -- | 1.04 | -- | -- | 0.506 | -- | 25.53 | 133 | 7.59 | -- |
| 431.17 | 0.969 | 10.5 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.49 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 11 |
| 3 | 227.23 | temperature | 25.0 | 90 | < th | dose independent | sin | 13 | NA |
| 4 | 227.77 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 40 | 235.07 | temperature | 25.0 | 90 | > th | dose independent | sin | 13 | NA |
| 113 | 241.03 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 119 | 241.26 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 133 | 241.62 | temperature | 25.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 145 | 241.91 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 8 |
| 182 | 242.78 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 1 |
| 211 | 244.16 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 217 | 244.40 | temperature | 25.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 296 | 246.70 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 314 | 247.04 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 344 | 247.97 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 348 | 248.04 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 11 |
| 378 | 248.43 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 456 | 250.12 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 460 | 250.16 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 471 | 250.43 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 1 |
| 477 | 250.51 | temperature | 20.0 | 90 | > th | dose dependent | sin | 13 | NA |
| 479 | 250.58 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 504 | 250.94 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 521 | 251.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 523 | 251.28 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 558 | 251.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 734 | 254.16 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 771 | 254.62 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 795 | 254.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 5 |
| 797 | 254.89 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 3 |
| 802 | 254.97 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 808 | 255.06 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 820 | 255.11 | wind | 9.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 835 | 255.25 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 841 | 255.33 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 864 | 255.64 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 870 | 255.74 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 881 | 255.83 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 10 |
| 887 | 255.97 | radiation | 10.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 889 | 255.98 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 893 | 256.01 | wind | 9.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 909 | 256.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 920 | 256.21 | wind | 9.0 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 952 | 256.56 | humidity | 90.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 980 | 256.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 982 | 256.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 990 | 256.86 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 992 | 256.88 | wind | 9.0 | 4320 | > th | dose independent | rect. | 10 | 6 |
| 994 | 256.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 18 | 2 |