BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0405500 Os03g0405500|AK069583
(569 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0405500 Similar to PDI-like protein 1057 0.0
Os03g0405900 Thioredoxin-like domain containing protein 569 e-162
Os01g0794400 Thioredoxin domain 2 containing protein 242 5e-64
Os04g0608600 Thioredoxin domain 2 containing protein 178 1e-44
Os11g0221400 101 1e-21
>Os03g0405500 Similar to PDI-like protein
Length = 569
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/569 (91%), Positives = 518/569 (91%)
Query: 1 MADAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAY 60
MADAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAY
Sbjct: 1 MADAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAY 60
Query: 61 NELVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLV 120
NELVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLV
Sbjct: 61 NELVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLV 120
Query: 121 ILNATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDY 180
ILNATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDY
Sbjct: 121 ILNATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDY 180
Query: 181 LLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVXXX 240
LLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAV
Sbjct: 181 LLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVSLD 240
Query: 241 XXXXXXXXXFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDE 300
FAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDE
Sbjct: 241 SDEELSNESFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDE 300
Query: 301 HGQDAWEGFPFTXXXXXXXXXXXXXXXXLQTLESLLVIGDLDFVLGKDGAKVPVSELVGK 360
HGQDAWEGFPFT LQTLESLLVIGDLDFVLGKDGAKVPVSELVGK
Sbjct: 301 HGQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFVLGKDGAKVPVSELVGK 360
Query: 361 TVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQSSYDEFFSGMPWLA 420
TVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQSSYDEFFSGMPWLA
Sbjct: 361 TVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQSSYDEFFSGMPWLA 420
Query: 421 LPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFTEERLLEME 480
LPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFTEERLLEME
Sbjct: 421 LPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFTEERLLEME 480
Query: 481 RKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCRECDFDLHPKCA 540
RKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCRECDFDLHPKCA
Sbjct: 481 RKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCRECDFDLHPKCA 540
Query: 541 LXXXXXXXXXXXXXXXXXXXXXXXVCRKA 569
L VCRKA
Sbjct: 541 LGKEEEKKGDDEAEAEADPACEGGVCRKA 569
>Os03g0405900 Thioredoxin-like domain containing protein
Length = 413
Score = 569 bits (1467), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/360 (78%), Positives = 302/360 (83%), Gaps = 5/360 (1%)
Query: 186 GDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVXXXXXXXX 245
G +VPISDLEGKYVGLCFVVNGYGPVVQFTS+LAK YEKLK VGEKFEVV V
Sbjct: 25 GTQVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMVSLDGDEES 84
Query: 246 XXXXFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDA 305
FA MPWLAIPQ DKM EKLARYFEL GLP LVLIGPDGKTLN+++ADIIDEHG DA
Sbjct: 85 FNESFADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIGPDGKTLNDDIADIIDEHGPDA 144
Query: 306 WEGFPFTXXXXXXXXXXXXXXXXLQTLESLLVIGDLDFVLGKDGAKVPVSELVGKTVLLY 365
WEGFPF+ QTLESLLV GDLDFVLGKDGAKVPVSELVGKTVLLY
Sbjct: 145 WEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLY 204
Query: 366 FSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQSSYDEFFSGMPWLALPLGD 425
FSAKWC PCRAFLPKLV+EYNKIKEKHNDFEI+FISSDR+QSSYDEFFSGMPWLALPLGD
Sbjct: 205 FSAKWCPPCRAFLPKLVNEYNKIKEKHNDFEIVFISSDREQSSYDEFFSGMPWLALPLGD 264
Query: 426 ERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFT----EERLLEMER 481
ERKQ LSK F++ GIPSLVAIG DG+TV +DAKTPL AHGADAFPFT +E E E+
Sbjct: 265 ERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADAFPFTEEKLQELEKEKEK 324
Query: 482 KIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCRECDFDLHPKCAL 541
KI++MAKGWP KLKH+LHD HELVLTRCTTYGCDGCDEMG SWSYRC+ECDFDLHPKCAL
Sbjct: 325 KINDMAKGWPEKLKHDLHD-HELVLTRCTTYGCDGCDEMGDSWSYRCKECDFDLHPKCAL 383
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 170/298 (57%), Gaps = 9/298 (3%)
Query: 18 FLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNELVSQGKNFEVVFVSG 77
FLL + QV IS +E V L F + P +FT L + Y +L + G+ FEVV VS
Sbjct: 20 FLLVDGT-QVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMVSL 78
Query: 78 DKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVILNATSGEVYTEDGVEL 137
D D+E+F+ FA MPWLA+P D C KL + F++ G+P LV++ G+ +D ++
Sbjct: 79 DGDEESFNESFADMPWLAIPQGDKMCE-KLARYFELSGLPMLVLI-GPDGKTLNDDIADI 136
Query: 138 VTVHGTEA---YPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYLLSNKGDRVPISDL 194
+ HG +A +PF+ E++ L E+ KA ++QT++S+L T D++L G +VP+S+L
Sbjct: 137 IDEHGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSEL 196
Query: 195 EGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVXXXXXXXXXXXXFAGMP 254
GK V L F P F L Y K+KE FE+V + F+GMP
Sbjct: 197 VGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKHNDFEIVFISSDREQSSYDEFFSGMP 256
Query: 255 WLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDAWEGFPFT 312
WLA+P D+ ++L++ F++ G+P+LV IGPDGKT+ + + HG DA FPFT
Sbjct: 257 WLALPLGDERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADA---FPFT 311
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 94/148 (63%), Gaps = 2/148 (1%)
Query: 2 ADAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYN 61
A++ + ++L DF+L +V +S + TV LYFSA WCPPCR F PKL+ YN
Sbjct: 166 AESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCPPCRAFLPKLVNEYN 225
Query: 62 ELVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVI 121
++ + +FE+VF+S D++Q ++D +F+ MPWLA+P D E + +L+K FK+ GIP LV
Sbjct: 226 KIKEKHNDFEIVFISSDREQSSYDEFFSGMPWLALPLGD-ERKQQLSKIFKITGIPSLVA 284
Query: 122 LNATSGEVYTEDGVELVTVHGTEAYPFT 149
+ G+ T+D + HG +A+PFT
Sbjct: 285 I-GPDGKTVTKDAKTPLVAHGADAFPFT 311
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 348 DGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQS 407
DG +VP+S+L GK V L F GP F L Y K+K FE++ +S D D+
Sbjct: 24 DGTQVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMVSLDGDEE 83
Query: 408 SYDEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGAD 467
S++E F+ MPWLA+P GD+ + L++ F + G+P LV IG DG+T+ D + HG D
Sbjct: 84 SFNESFADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIGPDGKTLNDDIADIIDEHGPD 143
Query: 468 A---FPFTEERL 476
A FPF+ E+L
Sbjct: 144 AWEGFPFSAEKL 155
>Os01g0794400 Thioredoxin domain 2 containing protein
Length = 394
Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 206/389 (52%), Gaps = 14/389 (3%)
Query: 158 EQEKAAKDNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSL 217
E E+A ++ SVL + L+S G+ V IS+LEGK +GL F N Y FT
Sbjct: 6 EMEEARENGGVGGSVLPLAS---LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPA 62
Query: 218 LAKFYEKLKEVGEKFEVVAVXXXXXXXXXXXXFAGMPWLAIPQED-KMGEKLARYFELRG 276
L Y +LKE G FEV+ V MPW A+P D ++L+ F++ G
Sbjct: 63 LTAAYHQLKEHGAGFEVIFVSCDENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEG 122
Query: 277 LPTLVLIGPDGKTLNNNVADIIDEHGQDAWEGFPFTXXXXXXXXXXXXXXXXLQTLESLL 336
+P LV++ P+G+ + + +++ +G A FPFT QTLE +
Sbjct: 123 IPRLVVLAPNGEVVQPDAVELVHRYGDRA---FPFTSARVAELEADEQRKFASQTLEKIF 179
Query: 337 VIGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFE 396
+ D+V G +VP+S LVGKTV LYFSA C PC F KL Y+ +K K DFE
Sbjct: 180 SVSGKDYVNGSQ-EQVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFE 238
Query: 397 IIFISSDRDQSSYDEFFSGMPWLALPLGD-ERKQHLSKTFRVRGIPSLVAIGADGRTVAR 455
II+I D+++ Y S MPWLALP D L++ F VR IP+LV +G DG+TV R
Sbjct: 239 IIYIPMDKEEDGYLRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTR 298
Query: 456 DAKTPLTAHGADAFPFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTT---- 511
+ + + + AFPFT+E++ ++ DE AKG+P L+H H HEL + +
Sbjct: 299 EGRNLVNLYFDMAFPFTDEQIRLLQEMEDEDAKGYPPSLRHTGH-RHELSIVSDKSGGGP 357
Query: 512 YGCDGCDEMGSSWSYRCRECDFDLHPKCA 540
Y C CDE G W+Y+C C +++H +C
Sbjct: 358 YICCECDEQGLGWAYQCIACGYEIHLRCG 386
Score = 232 bits (591), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 181/295 (61%), Gaps = 6/295 (2%)
Query: 19 LLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNELVSQGKNFEVVFVSGD 78
L+ + ++V+IS +E + LYF+A+W P C FTP L AY++L G FEV+FVS D
Sbjct: 26 LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85
Query: 79 KDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVILNATSGEVYTEDGVELV 138
+++ +F+ + MPW AVPF D C+ +L++RF+V GIP LV+L A +GEV D VELV
Sbjct: 86 ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVL-APNGEVVQPDAVELV 144
Query: 139 TVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKY 198
+G A+PFT+ R+ EL+ E+ +QT++ + +DY+ ++ ++VPIS L GK
Sbjct: 145 HRYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGSQ-EQVPISSLVGKT 203
Query: 199 VGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVXXXXXXXXXXXXFAGMPWLAI 258
VGL F + P ++FT+ LA Y LK E FE++ + + MPWLA+
Sbjct: 204 VGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEIIYIPMDKEEDGYLRSCSDMPWLAL 263
Query: 259 PQEDKMGE-KLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDAWEGFPFT 312
P +D LARYF++R +PTLV++GPDGKT+ ++++ + A FPFT
Sbjct: 264 PYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMA---FPFT 315
>Os04g0608600 Thioredoxin domain 2 containing protein
Length = 200
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 119/191 (62%), Gaps = 2/191 (1%)
Query: 351 KVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKE-KHNDFEIIFISSDRDQSSY 409
+ P+S+L GKT+ LYF A WC PCRAF +L + Y+++K + +F++IFIS DR++ +
Sbjct: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Query: 410 DEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAF 469
S MPW A+P D Q LS+ F ++GIP+L+ +G DG+ D + ++ +GA AF
Sbjct: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMAF 122
Query: 470 PFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCR 529
PFTE R E+E + + P +++ H EHEL L Y CD C + G +W + C+
Sbjct: 123 PFTESRAYELEEVLKKERDSLPHRVRDHRH-EHELELDMAKAYVCDECQQKGQNWVFSCK 181
Query: 530 ECDFDLHPKCA 540
+C+FDLHP CA
Sbjct: 182 QCNFDLHPTCA 192
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Query: 26 QVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNELVS-QGKNFEVVFVSGDKDQEAF 84
Q IS + T+ LYF A WCPPCR FT +L EAY+EL + + NF+V+F+S D+++E F
Sbjct: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Query: 85 DAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVILNATSGEVYTEDGVELVTVHGTE 144
A + MPW A+P+SD+ + +L++ F ++GIP L+IL G+V+ DG +++ +G
Sbjct: 63 QASLSAMPWFAIPYSDTTVQ-ELSRIFTIKGIPTLLIL-GPDGKVFKTDGRRIISKYGAM 120
Query: 145 AYPFTTERINELKEQEKAAKDN 166
A+PFT R EL+E K +D+
Sbjct: 121 AFPFTESRAYELEEVLKKERDS 142
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 188 RVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGE-KFEVVAVXXXXXXXXX 246
+ PISDL GK +GL F + P FT L + Y++LK + F+V+ +
Sbjct: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Query: 247 XXXFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDAW 306
+ MPW AIP D ++L+R F ++G+PTL+++GPDGK + II ++G A
Sbjct: 63 QASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA- 121
Query: 307 EGFPFT 312
FPFT
Sbjct: 122 --FPFT 125
>Os11g0221400
Length = 275
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 62/77 (80%), Gaps = 1/77 (1%)
Query: 331 TLESLLVIGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKE 390
TLESL+V GDL FV+GKDG KVPV+ LVG+T LLYFSA WC PCR FLPKL++EY K++E
Sbjct: 172 TLESLMVSGDLYFVVGKDGEKVPVAWLVGRTGLLYFSAHWCSPCRKFLPKLIEEYIKMRE 231
Query: 391 K-HNDFEIIFISSDRDQ 406
+ +D E++F+S+ Q
Sbjct: 232 ETSSDVEVVFVSNTDGQ 248
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,999,652
Number of extensions: 721203
Number of successful extensions: 1760
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1730
Number of HSP's successfully gapped: 11
Length of query: 569
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 463
Effective length of database: 11,501,117
Effective search space: 5325017171
Effective search space used: 5325017171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)