Os01g0794400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0794400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Thioredoxin domain 2 containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.27 | 0.365 | 12 | 1.81 | 0.726 | -1.91 | 1.26 | 0.706 | 0.204 | 6.75 | 1.358 | 1468 | -- | -- |
| 60.55 | 0.362 | 12 | 1.89 | 0.729 | -2.02 | 1.22 | -- | 0.208 | 6.81 | 1.426 | 1464 | -- | -- |
| 63.89 | 0.372 | 12 | 1.85 | 0.744 | -1.79 | -- | 0.909 | 0.202 | 7.19 | 1.766 | 1452 | -- | -- |
| 64.26 | 0.373 | 12 | 1.92 | 0.743 | -1.97 | -- | -- | 0.216 | 7.2 | 1.474 | 1452 | -- | -- |
| 91.48 | 0.445 | 12 | 1.89 | -- | -2.02 | -- | 0.512 | 0.22 | -- | 1.765 | 1477 | -- | -- |
| 103.8 | 0.478 | 11.9 | 2.33 | 0.791 | -- | 1.11 | -- | 0.466 | 7.28 | -- | -- | -- | -- |
| 106.98 | 0.484 | 11.9 | 2.35 | 0.791 | -- | -- | -- | 0.464 | 7.49 | -- | -- | -- | -- |
| 91.63 | 0.446 | 12 | 1.93 | -- | -2.11 | -- | -- | 0.221 | -- | 1.648 | 1476 | -- | -- |
| 149.62 | 0.57 | 12 | -- | 0.747 | -2.87 | -- | -- | 0.252 | 6.18 | 0.1671 | 1468 | -- | -- |
| 140.46 | 0.554 | 11.9 | 2.36 | -- | -- | -- | -- | 0.477 | -- | -- | -- | -- | -- |
| 252.71 | 0.744 | 12 | -- | 0.813 | -- | -- | -- | 0.202 | 7.3 | -- | -- | -- | -- |
| 173.13 | 0.613 | 12 | -- | -- | -3.06 | -- | -- | 0.0277 | -- | 0.17 | 1468 | -- | -- |
| 287.82 | 0.792 | 12 | -- | -- | -- | -- | -- | 0.215 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.01 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 2 | 59.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 3 | 59.09 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 5 | 59.15 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 8 | 59.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 9 | 59.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 12 | 59.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 14 | 59.58 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 15 | 59.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 17 | 59.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 18 | 59.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 29 | 59.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 33 | 59.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 39 | 59.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 43 | 59.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 18 |
| 52 | 60.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 53 | 60.25 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 72 | 60.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 76 | 60.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 82 | 60.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 87 | 60.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 212 | 61.15 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 243 | 61.22 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 293 | 61.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 297 | 61.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 310 | 61.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 315 | 61.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 328 | 61.25 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 338 | 61.26 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 350 | 61.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 408 | 61.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 412 | 61.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 433 | 61.43 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 692 | 63.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 705 | 63.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 712 | 63.99 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 714 | 64.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 728 | 64.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 815 | 64.80 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 819 | 64.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 829 | 64.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 835 | 65.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 873 | 65.40 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 928 | 66.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |