BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0794400 Os01g0794400|AK122041
(394 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0794400 Thioredoxin domain 2 containing protein 815 0.0
Os03g0405900 Thioredoxin-like domain containing protein 255 3e-68
Os03g0405500 Similar to PDI-like protein 253 2e-67
Os04g0608600 Thioredoxin domain 2 containing protein 164 8e-41
>Os01g0794400 Thioredoxin domain 2 containing protein
Length = 394
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MGREPEMEEARENGGVGGSVLPLASLISPTGNEVQISELEGKIIGLYFAANWYPKCEAFT 60
MGREPEMEEARENGGVGGSVLPLASLISPTGNEVQISELEGKIIGLYFAANWYPKCEAFT
Sbjct: 1 MGREPEMEEARENGGVGGSVLPLASLISPTGNEVQISELEGKIIGLYFAANWYPKCEAFT 60
Query: 61 PALTAAYHQLKEHGAGFEVIFVSCDENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQV 120
PALTAAYHQLKEHGAGFEVIFVSCDENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQV
Sbjct: 61 PALTAAYHQLKEHGAGFEVIFVSCDENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQV 120
Query: 121 EGIPRLVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKFASQTLEKIFS 180
EGIPRLVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKFASQTLEKIFS
Sbjct: 121 EGIPRLVVLAPNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADEQRKFASQTLEKIFS 180
Query: 181 VSGKDYVNGSQEQVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEII 240
VSGKDYVNGSQEQVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEII
Sbjct: 181 VSGKDYVNGSQEQVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEII 240
Query: 241 YIPMDKEEDGYLRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREG 300
YIPMDKEEDGYLRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREG
Sbjct: 241 YIPMDKEEDGYLRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREG 300
Query: 301 RNLVNLYFDMAFPFTDEQIRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYIC 360
RNLVNLYFDMAFPFTDEQIRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYIC
Sbjct: 301 RNLVNLYFDMAFPFTDEQIRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYIC 360
Query: 361 CECDEQGLGWAYQCIACGYEIHLRCGRDMEGRAE 394
CECDEQGLGWAYQCIACGYEIHLRCGRDMEGRAE
Sbjct: 361 CECDEQGLGWAYQCIACGYEIHLRCGRDMEGRAE 394
>Os03g0405900 Thioredoxin-like domain containing protein
Length = 413
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 216/380 (56%), Gaps = 14/380 (3%)
Query: 23 LASLISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFV 82
L+ + G +V IS+LEGK +GL F N Y FT L Y +LK G FEV+ V
Sbjct: 17 LSCFLLVDGTQVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEKLKAVGEKFEVVMV 76
Query: 83 SCDENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVE 142
S D + SF MPW A+P GD C+K L+ F++ G+P LV++ P+G+ + D +
Sbjct: 77 SLDGDEESFNESFADMPWLAIPQGDKMCEK-LARYFELSGLPMLVLIGPDGKTLNDDIAD 135
Query: 143 LVHRYGDRA---FPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGSQ-EQVPISS 198
++ +G A FPF++ ++ L + K SQTLE + D+V G +VP+S
Sbjct: 136 IIDEHGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSE 195
Query: 199 LVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEIIYIPMDKEEDGYLRSCSDM 258
LVGKTV LYFSA C PC F KL Y+ +K K DFEI++I D+E+ Y S M
Sbjct: 196 LVGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKHNDFEIVFISSDREQSSYDEFFSGM 255
Query: 259 PWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQ 318
PWLALP D L++ F + IP+LV +GPDGKTVT++ + + + AFPFT+E+
Sbjct: 256 PWLALPLGD-ERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVAHGADAFPFTEEK 314
Query: 319 IRLLQEME----DEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQC 374
++ L++ + ++ AKG+P L+H H HEL + + Y C CDE G W+Y+C
Sbjct: 315 LQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLTRCTT----YGCDGCDEMGDSWSYRC 370
Query: 375 IACGYEIHLRCGRDMEGRAE 394
C +++H +C + +G E
Sbjct: 371 KECDFDLHPKCALEEKGDVE 390
>Os03g0405500 Similar to PDI-like protein
Length = 569
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 221/399 (55%), Gaps = 16/399 (4%)
Query: 6 EMEEARENGGVGGSVLPLAS---LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPA 62
E E+A ++ SVL + L+S G+ V IS+LEGK +GL F N Y FT
Sbjct: 158 EQEKAAKDNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSL 217
Query: 63 LTAAYHQLKEHGAGFEVIFVSCDENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEG 122
L Y +LKE G FEV+ VS D + MPW A+P D ++L+ F++ G
Sbjct: 218 LAKFYEKLKEVGEKFEVVAVSLDSDEELSNESFAGMPWLAIPQED-KMGEKLARYFELRG 276
Query: 123 IPRLVVLAPNGEVVQPDAVELVHRYGDRA---FPFTSARVAELEADEQRKFASQTLEKIF 179
+P LV++ P+G+ + + +++ +G A FPFT+ ++ L + K QTLE +
Sbjct: 277 LPTLVLIGPDGKTLNNNVADIIDEHGQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLL 336
Query: 180 SVSGKDYVNGSQ-EQVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFE 238
+ D+V G +VP+S LVGKTV LYFSA C PC F KL Y+ +K K DFE
Sbjct: 337 VIGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFE 396
Query: 239 IIYIPMDKEEDGYLRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTR 298
II+I D+++ Y S MPWLALP D L++ F VR IP+LV +G DG+TV R
Sbjct: 397 IIFISSDRDQSSYDEFFSGMPWLALPLGD-ERKQHLSKTFRVRGIPSLVAIGADGRTVAR 455
Query: 299 EGRNLVNLYFDMAFPFTDEQIRLLQEMEDEDAKGYPPSLRHTGH-RHELSIVSDKSGGGP 357
+ + + + AFPFT+E++ ++ DE AKG+P L+H H HEL + +
Sbjct: 456 DAKTPLTAHGADAFPFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTT---- 511
Query: 358 YICCECDEQGLGWAYQCIACGYEIHLRC--GRDMEGRAE 394
Y C CDE G W+Y+C C +++H +C G++ E + +
Sbjct: 512 YGCDGCDEMGSSWSYRCRECDFDLHPKCALGKEEEKKGD 550
Score = 247 bits (631), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 193/304 (63%), Gaps = 6/304 (1%)
Query: 26 LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85
L+ + ++V+IS +E + LYF+A+W P C FTP L AY++L G FEV+FVS D
Sbjct: 19 LLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNELVSQGKNFEVVFVSGD 78
Query: 86 ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVL-APNGEVVQPDAVELV 144
+++ +F+ + MPW AVPF D C+ +L++RF+V GIP LV+L A +GEV D VELV
Sbjct: 79 KDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVILNATSGEVYTEDGVELV 138
Query: 145 HRYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYVNGSQ-EQVPISSLVGKT 203
+G A+PFT+ R+ EL+ E+ +QT++ + +DY+ ++ ++VPIS L GK
Sbjct: 139 TVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKY 198
Query: 204 VGLYFSAHRCAPCIKFTAKLAAIYSNLKGKAEDFEIIYIPMDKEEDGYLRSCSDMPWLAL 263
VGL F + P ++FT+ LA Y LK E FE++ + +D +E+ S + MPWLA+
Sbjct: 199 VGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVSLDSDEELSNESFAGMPWLAI 258
Query: 264 PYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMA---FPFTDEQIR 320
P +D LARYF++R +PTLV++GPDGKT+ ++++ + A FPFT E++
Sbjct: 259 PQEDKMGE-KLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEHGQDAWEGFPFTAEKME 317
Query: 321 LLQE 324
+L E
Sbjct: 318 ILAE 321
>Os04g0608600 Thioredoxin domain 2 containing protein
Length = 200
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 6/197 (3%)
Query: 193 QVPISSLVGKTVGLYFSAHRCAPCIKFTAKLAAIYSNLKG-KAEDFEIIYIPMDKEEDGY 251
Q PIS L GKT+GLYF AH C PC FT +L Y LK + +F++I+I MD+ E+ +
Sbjct: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Query: 252 LRSCSDMPWLALPYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMA 311
S S MPW A+PY D + L+R F ++ IPTL+++GPDGK +GR +++ Y MA
Sbjct: 63 QASLSAMPWFAIPYSD-TTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA 121
Query: 312 FPFTDEQIRLLQEMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWA 371
FPFT+ + L+E+ ++ P +R H HEL + K+ Y+C EC ++G W
Sbjct: 122 FPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKA----YVCDECQQKGQNWV 177
Query: 372 YQCIACGYEIHLRCGRD 388
+ C C +++H C ++
Sbjct: 178 FSCKQCNFDLHPTCAQE 194
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 33 EVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAG-FEVIFVSCDENRPSF 91
+ IS+L GK IGLYF A+W P C AFT L AY +LK G F+VIF+S D N F
Sbjct: 3 QTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEEEF 62
Query: 92 ERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVHRYGDRA 151
+ AMPW A+P+ D ++ LS F ++GIP L++L P+G+V + D ++ +YG A
Sbjct: 63 QASLSAMPWFAIPYSDTTVQE-LSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAMA 121
Query: 152 FPFTSARVAELE 163
FPFT +R ELE
Sbjct: 122 FPFTESRAYELE 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,307,292
Number of extensions: 712783
Number of successful extensions: 1599
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1572
Number of HSP's successfully gapped: 7
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)