BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0405500 Os03g0405500|AK069583
(569 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60420.1 | chr1:22261978-22264243 FORWARD LENGTH=579 615 e-176
AT4G31240.1 | chr4:15176637-15177986 REVERSE LENGTH=393 242 4e-64
AT2G28270.1 | chr2:12053652-12054398 FORWARD LENGTH=249 49 7e-06
>AT1G60420.1 | chr1:22261978-22264243 FORWARD LENGTH=579
Length = 578
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/539 (55%), Positives = 390/539 (72%), Gaps = 5/539 (0%)
Query: 3 DAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNE 62
DA + ++L++ RDFL+RN +QVK+ S+ + LYFSA+WC PC+RFTP+L+E YNE
Sbjct: 12 DAQDLHSLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLVEVYNE 71
Query: 63 LVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVIL 122
L S+ FE+VFVSGD+D+E+F YF KMPWLAVPF+DSE R +L++ FKVRGIP+LV++
Sbjct: 72 LSSK-VGFEIVFVSGDEDEESFGDYFRKMPWLAVPFTDSETRDRLDELFKVRGIPNLVMV 130
Query: 123 NATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYLL 182
+ G++ E+GV ++ +G +AYPFT E++ E+KE E A+ QT++SVL TP+RD+++
Sbjct: 131 D-DHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDEDRARRGQTLRSVLVTPSRDFVI 189
Query: 183 SNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGEKFEVVAVXXXXX 242
S G++VP+S+LEGK +GL F V Y + T L +FY KLKE E FE+V +
Sbjct: 190 SPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKEDFEIVLISLEDD 249
Query: 243 XXXXXXXFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEHG 302
F PWLA+P DK G KLAR+F L LPTLV++GPDGKT ++NVA+ ID++G
Sbjct: 250 EESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTRHSNVAEAIDDYG 309
Query: 303 QDAWEGFPFTXXXXXXXXXXXXXXXXLQTLESLLVIGDLDFVLGKDGAKVPVSELVGKTV 362
A +PFT QTLESLLV GDL++VLGKDGAKV VS+LVGKT+
Sbjct: 310 VLA---YPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVLVSDLVGKTI 366
Query: 363 LLYFSAKWCGPCRAFLPKLVDEYNKIKEKHNDFEIIFISSDRDQSSYDEFFSGMPWLALP 422
L+YFSA WC PCRAF PKLV+ Y +IKE++ FE+IFISSDRDQ S+DE++S MPWLALP
Sbjct: 367 LMYFSAHWCPPCRAFTPKLVEVYKQIKERNEAFELIFISSDRDQESFDEYYSQMPWLALP 426
Query: 423 LGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGADAFPFTEERLLEMERK 482
GD RK L+KTF+V GIP L A+G G+TV ++A+ + AHGADA+PFTEERL E+E K
Sbjct: 427 FGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFTEERLKEIEAK 486
Query: 483 IDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYRCRECDFDLHPKCAL 541
DE+AK WP K+KH LH+EHEL LTR Y CD C+E G+ WSY C ECDFDLH KCAL
Sbjct: 487 YDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 545
>AT4G31240.1 | chr4:15176637-15177986 REVERSE LENGTH=393
Length = 392
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/373 (35%), Positives = 203/373 (54%), Gaps = 6/373 (1%)
Query: 169 VQSVLGTPTRDYLLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEV 228
+ S+L ++LLS+ G+ VP+ + GK + L F P FT L K YE L+
Sbjct: 17 LYSILAAEGIEFLLSHSGE-VPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYENLQNR 75
Query: 229 GEKFEVVAVXXXXXXXXXXXXFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGK 288
GE+ E++ V F MPWLA+P + KL + + +P+LV + D
Sbjct: 76 GEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYGISRIPSLVPLYSDEI 135
Query: 289 TLNNNVADIIDEHGQDAWEGFPFTXXXXXXXXXXXXXXXXLQTLESLLVIGDLDFVLGKD 348
++ +V +I+++G +A FPFT LE LL ++V+ ++
Sbjct: 136 SVAEDVIGLIEDYGSEA---FPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVARN 192
Query: 349 GAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEK-HNDFEIIFISSDRDQS 407
G+KV VS+LVGKT+ LYF A WC P R+F +LVD YN++ FE+I IS+DRD
Sbjct: 193 GSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDSR 252
Query: 408 SYDEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTAHGAD 467
++ + MPWLA+P D +Q L + F V+ IP+LV IG + +TV +A+ ++ +G+
Sbjct: 253 EFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGSR 312
Query: 468 AFPFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSSWSYR 527
+FPFTE R++E++ + + P K+K H EHEL L Y CD C + G W++
Sbjct: 313 SFPFTESRIVELKACLKKEGDSLPRKVKDNKH-EHELKLDMAKAYVCDFCKKQGRFWAFS 371
Query: 528 CRECDFDLHPKCA 540
C CD+DLHP C
Sbjct: 372 CNACDYDLHPTCV 384
Score = 205 bits (521), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/311 (36%), Positives = 177/311 (56%), Gaps = 7/311 (2%)
Query: 3 DAAGIATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNE 62
++ + ++LAA+G +FLL +S +V + I T+ L+FSA WC PC+ FTP+LI+ Y
Sbjct: 13 ESGDLYSILAAEGIEFLLSHSG-EVPLEYIHGKTICLFFSAIWCRPCKDFTPELIKLYEN 71
Query: 63 LVSQGKNFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVIL 122
L ++G+ E++FVS D D +F +F MPWLAVPF+ S KL ++ + IP LV L
Sbjct: 72 LQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLS-LLNKLRDKYGISRIPSLVPL 130
Query: 123 NATSGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDNQTVQSVLGTPTRDYLL 182
+ V ED + L+ +G+EA+PFT +R ELK + + + ++ +L +R+Y++
Sbjct: 131 YSDEISV-AEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVV 189
Query: 183 SNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKEVGE-KFEVVAVXXXX 241
+ G +V +S L GK +GL F + P FTS L Y +L + FEV+ +
Sbjct: 190 ARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDR 249
Query: 242 XXXXXXXXFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIGPDGKTLNNNVADIIDEH 301
MPWLAIP ED+ + L R F ++ +P LV+IGP+ KT+ N +++ +
Sbjct: 250 DSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLY 309
Query: 302 GQDAWEGFPFT 312
G FPFT
Sbjct: 310 GS---RSFPFT 317
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 3/161 (1%)
Query: 7 IATVLAADGRDFLLRNSADQVKISSIEASTVALYFSASWCPPCRRFTPKLIEAYNELVSQ 66
+ +L + R++++ + +V +S + T+ LYF A WCPP R FT +L++ YNEL +
Sbjct: 176 LEKLLTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATT 235
Query: 67 GK-NFEVVFVSGDKDQEAFDAYFAKMPWLAVPFSDSECRAKLNKRFKVRGIPHLVILNAT 125
K +FEV+ +S D+D F+ MPWLA+P+ D R L + F V+ IP LVI+
Sbjct: 236 DKGSFEVILISTDRDSREFNINMTNMPWLAIPYED-RTRQDLCRIFNVKLIPALVIIGPE 294
Query: 126 SGEVYTEDGVELVTVHGTEAYPFTTERINELKEQEKAAKDN 166
V T + E+V+++G+ ++PFT RI ELK K D+
Sbjct: 295 EKTV-TTNAREMVSLYGSRSFPFTESRIVELKACLKKEGDS 334
>AT2G28270.1 | chr2:12053652-12054398 FORWARD LENGTH=249
Length = 248
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 491 PGKLKHELHDEHELVLTRC-----TTYGCDGCDEMGSSWSYRCRECDFDLHPKCAL 541
PG++ H+ H H L L +TY CD C E GS+++Y C EC + +H CA
Sbjct: 64 PGEIHHKSHTNHPLTLLHSPPNGLSTYTCDACGEYGSAFTYHCSECKYHVHVGCAF 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,649,902
Number of extensions: 485171
Number of successful extensions: 1987
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1988
Number of HSP's successfully gapped: 11
Length of query: 569
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 465
Effective length of database: 8,255,305
Effective search space: 3838716825
Effective search space used: 3838716825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)