BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0606400 Os04g0606400|AK102588
(572 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0606400 Similar to Mannosyl-oligosaccharide 1,2-alpha-... 1139 0.0
Os05g0209100 Glycoside hydrolase, family 47 protein 350 2e-96
Os01g0773600 Glycoside hydrolase, family 47 protein 224 2e-58
Os02g0741300 Glycoside hydrolase, family 47 protein 188 8e-48
AK110459 97 4e-20
>Os04g0606400 Similar to Mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC
3.2.1.113)
Length = 572
Score = 1139 bits (2945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/572 (95%), Positives = 549/572 (95%)
Query: 1 MARRXXXXXXXXGAWRYLNPAYYLKRPKRXXXXXXXXXXXXXXXWDRQSLVREYESEISR 60
MARR GAWRYLNPAYYLKRPKR WDRQSLVREYESEISR
Sbjct: 1 MARRSSSSSSSSGAWRYLNPAYYLKRPKRLALLFFVFVAATFAFWDRQSLVREYESEISR 60
Query: 61 LDDKVNQLRDQLRKAGVHLDENPTGDKVSREKLVEIDPINNERREKVKEAMAHAWNSYVK 120
LDDKVNQLRDQLRKAGVHLDENPTGDKVSREKLVEIDPINNERREKVKEAMAHAWNSYVK
Sbjct: 61 LDDKVNQLRDQLRKAGVHLDENPTGDKVSREKLVEIDPINNERREKVKEAMAHAWNSYVK 120
Query: 121 YAWGMDELQPQSKNGVNSFGGLGATLVDSLDTLYIMGLKDEFQRARDWVADSLSFDKDYD 180
YAWGMDELQPQSKNGVNSFGGLGATLVDSLDTLYIMGLKDEFQRARDWVADSLSFDKDYD
Sbjct: 121 YAWGMDELQPQSKNGVNSFGGLGATLVDSLDTLYIMGLKDEFQRARDWVADSLSFDKDYD 180
Query: 181 ASVFETTIRVVGGLLSAYDLSGDKVFLEKAKDITDRLLPAWDTPSGIPYNRINLAHGRAH 240
ASVFETTIRVVGGLLSAYDLSGDKVFLEKAKDITDRLLPAWDTPSGIPYNRINLAHGRAH
Sbjct: 181 ASVFETTIRVVGGLLSAYDLSGDKVFLEKAKDITDRLLPAWDTPSGIPYNRINLAHGRAH 240
Query: 241 NPGWTNGDSILADSGTEQLEFIALSQRTGDPKYQQKAENVIRQLQKIYPSDGLLPIYINP 300
NPGWTNGDSILADSGTEQLEFIALSQRTGDPKYQQKAENVIRQLQKIYPSDGLLPIYINP
Sbjct: 241 NPGWTNGDSILADSGTEQLEFIALSQRTGDPKYQQKAENVIRQLQKIYPSDGLLPIYINP 300
Query: 301 HSGTASYSTITFGAMGDSFYEYLLKVWVQGNKTEHVKHYRQMWETSMEGLLSLTKKTTPS 360
HSGTASYSTITFGAMGDSFYEYLLKVWVQGNKTEHVKHYRQMWETSMEGLLSLTKKTTPS
Sbjct: 301 HSGTASYSTITFGAMGDSFYEYLLKVWVQGNKTEHVKHYRQMWETSMEGLLSLTKKTTPS 360
Query: 361 NYYYICEKNGGSLSDKMDELACFAPGMLALGASGYEETEKAEEIMNLAKELARTCYNFYQ 420
NYYYICEKNGGSLSDKMDELACFAPGMLALGASGYEETEKAEEIMNLAKELARTCYNFYQ
Sbjct: 361 NYYYICEKNGGSLSDKMDELACFAPGMLALGASGYEETEKAEEIMNLAKELARTCYNFYQ 420
Query: 421 TTPTKLAGENYFFHTGQDMNVGTSWNILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFE 480
TTPTKLAGENYFFHTGQDMNVGTSWNILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFE
Sbjct: 421 TTPTKLAGENYFFHTGQDMNVGTSWNILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFE 480
Query: 481 KNSRIESGYVGLRDVNTGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPL 540
KNSRIESGYVGLRDVNTGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPL
Sbjct: 481 KNSRIESGYVGLRDVNTGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPL 540
Query: 541 RIVPLNDNSKAHSVGIATPTVRPFGRKQGKQE 572
RIVPLNDNSKAHSVGIATPTVRPFGRKQGKQE
Sbjct: 541 RIVPLNDNSKAHSVGIATPTVRPFGRKQGKQE 572
>Os05g0209100 Glycoside hydrolase, family 47 protein
Length = 645
Score = 350 bits (898), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 218/512 (42%), Positives = 298/512 (58%), Gaps = 64/512 (12%)
Query: 103 RREKVKEAMAHAWNSYVKYAWGMDELQPQSKNGVNSFGGLGATLVDSLDTLYIMGLKDEF 162
R++KVKEA HAW+ Y YA G DEL P ++ G++ GGLGAT+VDSLDT IMG D
Sbjct: 138 RQKKVKEAFEHAWSGYRNYAMGYDELMPLTRRGIDGLGGLGATVVDSLDTAIIMGADDVV 197
Query: 163 QRARDWVADSL--SFDKDYDASVFETTIRVVGGLLSAYDLS-GDKV-------------- 205
A W+ D+L + ++FETTIRV+GGLLSAY LS GDK
Sbjct: 198 SEASKWIEDNLMKKLSEKGQVNLFETTIRVLGGLLSAYHLSGGDKARGDSGIPMTSKRAN 257
Query: 206 ---FLEKAKDITDRLLPAW-DTPSGIPYNRINLAHGRAHNPGWTNGDSILADSGTEQLEF 261
LE +KD+ DRLL A+ +P+ IP + + L AH +G S +++ T QLE+
Sbjct: 258 PERLLEVSKDLADRLLLAFTSSPTAIPLSDVVLRDRTAH--AAPDGLSSTSEATTLQLEY 315
Query: 262 IALSQRTGDPKYQQKAENVIRQLQKIYPSDGLLPIYINPHSGTASYSTITFGAMGDSFYE 321
LS +GDPKY +A V+ ++ + +GL+PIYINP SG S I G+ GDS+YE
Sbjct: 316 SYLSTISGDPKYDLEAMKVLEHMRTLPTVEGLVPIYINPSSGQFSGENIRLGSRGDSYYE 375
Query: 322 YLLKVWVQGNKTE--HVKHYRQMWETSMEGLLS-LTKKTTPSNYYYICE----KNGGSLS 374
YLLKVWVQ + +K+ +M+ +M+G+ L +KT P+ ++ E +N G S
Sbjct: 376 YLLKVWVQQERYRDTSLKYLFEMYTEAMKGVKHLLVRKTIPNGLVFVGELPYGRNSG-FS 434
Query: 375 DKMDELACFAPGMLALGASGYEETEK--------AEEI--MNLAKELARTCYNFYQTTPT 424
KMD L CF PG LALGA+ +K AE+I + LA++LA+TC Y T T
Sbjct: 435 PKMDHLVCFLPGTLALGATKGITKKKALENHLLTAEDIDNLQLAEDLAKTCVEMYFVTST 494
Query: 425 KLAGENYFFHT------GQDMNVGTSW-------------NILRPETVESLMYLWRLTGN 465
LA E +FH G D +S N+LRPETVESL L+R+T +
Sbjct: 495 GLAPEIAYFHIEGNSEGGPDGGNKSSQYVNDIIIKPLDRHNLLRPETVESLFVLYRITED 554
Query: 466 KTYQDWGWDIFQAFEKNSRIES-GYVGLRDVNT--GEKDNMMQSFFLAETLKYLYLLFSP 522
Y++WGW IFQAFEK +R++S GY L DV + + + M++FFL ETLKYLYLLF
Sbjct: 555 PKYREWGWQIFQAFEKYTRVDSGGYTSLDDVTSLPPPRRDKMETFFLGETLKYLYLLFGE 614
Query: 523 PSVISFDEWVFNTEAHPLRIVPLNDNSKAHSV 554
+++ D++VFNTEAHPL I+ + +HSV
Sbjct: 615 SNILPLDKYVFNTEAHPLPIIQ-SAQQISHSV 645
>Os01g0773600 Glycoside hydrolase, family 47 protein
Length = 684
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 233/458 (50%), Gaps = 40/458 (8%)
Query: 104 REKVKEAMAHAWNSYVKYAWGMDELQPQSKNGVNSFGGLGATLVDSLDTLYIMGLKDEFQ 163
R++VK+ HA++ Y+++A+ +DEL+P S G +S GG TL+DSLDTL ++G K+ F
Sbjct: 57 RDEVKDMFYHAFDGYMQHAFPLDELRPLSCQGEDSLGGYALTLIDSLDTLALLGDKERFD 116
Query: 164 RARDWVADSLSFDKDYDASVFETTIRVVGGLLSAYDLSGDKV-----------FLEKAKD 212
A +WV ++ FD + SVFET IR++GGLLSA+ ++ D L A D
Sbjct: 117 AAVEWVGKNVRFDINKTVSVFETNIRILGGLLSAHLIASDYATGMRIQSYDDQLLHLAAD 176
Query: 213 ITDRLLPAWDTPSGIPYNRINLAHGRAHNPGWTNGDSILADSGTEQLEFIALSQRTGDPK 272
+ RLLPA+DTP+GIP+ +NL +G N A GT LEF LS+ T D
Sbjct: 177 LAQRLLPAFDTPTGIPFGSVNLLYGVDENESKITS---TAGGGTLTLEFGVLSRLTNDSV 233
Query: 273 YQQKAENVIRQLQKIYPSDGLLPIYINPHSGTASYSTITFGAMGDSFYEYLLKVWVQGNK 332
Y++ +N +R + L+ +IN +G + G DSFYEYLLK ++
Sbjct: 234 YERVTKNSVRGIWARRSKLDLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYLLFGD 293
Query: 333 TEHVKHYRQMWETSMEGLLSLTKKTTPSNYYYICEKNGGSLSDKMDELACFAPGMLALGA 392
E++ +++ ++ +M L P Y + +G ++ + L F PG+ L
Sbjct: 294 EEYLYIFQEAYKAAMHYL-----HHDPW-YVEVNMNSGATVWPLFNSLQAFWPGLQVLAG 347
Query: 393 SGYEETEKAEEIMNLAKELARTCYNFYQTTPTKLAGENYFFHTGQDMNVGTSWNILRPET 452
++ K+ T F T T G+ + LRPE
Sbjct: 348 DVDPAIRTHAAFFSVWKKYGFTPEGFNLATSTVQNGQRSY--------------PLRPEL 393
Query: 453 VESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESGYVGLRDVNTGEKDNMMQSFFLAET 512
+ES +L++ T + Y D G DI + + ++ GY + DV T ++D+ M+SFFLAET
Sbjct: 394 IESTYWLFKATRDYRYLDVGRDILASLQYGAKCPCGYCHISDVETHQQDDHMESFFLAET 453
Query: 513 LKYLYLLF----SPPSVISFD--EWVFNTEAHPLRIVP 544
+KYL+LLF P +++ +++F+TE H L P
Sbjct: 454 VKYLWLLFDLAAGPDNIVENGPYKYIFSTEGHLLPATP 491
>Os02g0741300 Glycoside hydrolase, family 47 protein
Length = 585
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 229/466 (49%), Gaps = 52/466 (11%)
Query: 104 REKVKEAMAHAWNSYVKYAWGMDELQPQSKNGVNSFGGLG---------------ATLVD 148
R KV E HA+++Y+ YA+ DEL+P +K+ +S LG TLV+
Sbjct: 49 RNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPNDYNGSALTLVE 108
Query: 149 SLDTLYIMGLKDEFQRARDWVADSLSFDKDYDASVFETTIRVVGGLLSAYDLSGDKV--- 205
SL +L ++G EF+R W++++L+FD D ++FE IR++GGL+S + L+ +
Sbjct: 109 SLSSLVVLGNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILAKEHSSHL 168
Query: 206 --------FLEKAKDITDRLLPAWDTPSGIPYNRINLAHGRAHNPGWTNGDSILADSGTE 257
L A+++ R LPA++TP+G+PY INL +G N ++ + G+
Sbjct: 169 KDGPYQDQLLHLAENLGSRFLPAFETPTGLPYAWINLKYGVMEN---ETTETSTSGCGSL 225
Query: 258 QLEFIALSQRTGDPKYQQKAENVIRQLQKIYPSDGLLPIYINPHSGTASYSTITFGAMGD 317
LE ALS+ TGD +Y+ A +R+L + S L+ ++ +G + GA D
Sbjct: 226 ILEMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGKWIEYSSGIGAGVD 285
Query: 318 SFYEYLLKVWVQGNKTEHVKHYRQMWETSMEGLLSLTKKTTPSNYYYICEKNGGSLSD-K 376
SFYEYL+K +V E+ W+ L++ K +Y+ + G + +
Sbjct: 286 SFYEYLIKAYVLFGSEEY-------WDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQ 338
Query: 377 MDELACFAPGMLALGASGYEETEKAEEIMNLAKELARTCYNFYQTTPTKLAGENYFFHTG 436
+ L F PG+ L + A R YN +Q + E Y G
Sbjct: 339 LTSLQAFWPGLQTLLGD-----------VAAANISHREFYNVWQRF--GVLPERYLLDFG 385
Query: 437 QDMNVGTSWNILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESGYVGLRDVN 496
++ + LRPE ES YL++ T + Y + G I + ++++ G+ +RDV+
Sbjct: 386 M-LHPTEKYYPLRPEFAESTFYLYQATKDPWYLEVGEAIIGSLNYYTKVDGGFASVRDVS 444
Query: 497 TGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLRI 542
T + ++ SFFL+ET KYL+LL+ S + ++F TE HPL I
Sbjct: 445 TMKLEDHQHSFFLSETCKYLFLLYD-DSFLRNQNYIFTTEGHPLPI 489
>AK110459
Length = 440
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 70/105 (66%), Gaps = 4/105 (3%)
Query: 440 NVGTSWNILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESGYVGLRDVN--- 496
+G+ ILRPE +ES+ Y++R+TG+ +++ GW +F+A E+++ + G + DV
Sbjct: 334 KIGSRDYILRPEAIESVWYMYRITGDNHWREAGWRMFKAIEEHTATKFGNSAIDDVTKLI 393
Query: 497 TGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLR 541
KD M +SF+LAETLKY YLLF VIS D+WV NTEAHP +
Sbjct: 394 PAIKDEM-ESFWLAETLKYFYLLFDTEDVISLDDWVLNTEAHPFK 437
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,392,551
Number of extensions: 805891
Number of successful extensions: 2013
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1997
Number of HSP's successfully gapped: 5
Length of query: 572
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 466
Effective length of database: 11,501,117
Effective search space: 5359520522
Effective search space used: 5359520522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)