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Os02g0741300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 47 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0162) R2 : 0.628
β1 : -1.63 (0.0592) R2dD : 0.64 R2D : 0.541
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.308 (0.0345) R2dN8 : 0.0869 R2N8 : -0.0117
σ : 0.303
deviance : 42.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.31 0.254 10.4 -1.56 0.442 0.541 -0.909 -0.12 -0.262 11.9 26.72 350 -- --
29.25 0.252 10.4 -1.55 0.417 0.531 -0.849 -- -0.268 11.9 26.5 379 -- --
30.63 0.258 10.4 -1.62 0.498 0.495 -- 0.731 -0.286 11.9 14.21 346 -- --
32.29 0.265 10.4 -1.6 0.403 0.504 -- -- -0.27 11.7 25.96 381 -- --
34.82 0.275 10.4 -1.74 -- 0.583 -- 0.787 -0.236 -- 6.231 3714 -- --
34.38 0.275 10.4 -1.62 0.357 -- -0.498 -- -0.312 8.08 -- -- -- --
34.86 0.277 10.4 -1.63 0.37 -- -- -- -0.314 7.39 -- -- -- --
33.45 0.269 10.4 -1.61 -- 0.554 -- -- -0.283 -- 7.201 912 -- --
99.53 0.465 10.4 -- 0.405 0.61 -- -- -0.0931 12.2 34.67 411 -- --
42.14 0.303 10.4 -1.63 -- -- -- -- -0.308 -- -- -- -- --
105.25 0.48 10.4 -- 0.356 -- -- -- -0.132 7.69 -- -- -- --
99.5 0.465 10.4 -- -- 0.606 -- -- -0.06 -- 34.52 947 -- --
112.06 0.494 10.4 -- -- -- -- -- -0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.37 radiation 20.0 270 < th dose independent rect. 13 20
4 28.50 temperature 15.0 90 > th dose independent rect. 11 18
6 28.65 radiation 40.0 270 < th dose dependent rect. 13 20
13 28.75 temperature 15.0 270 > th dose independent rect. 9 19
20 28.82 atmosphere 995.0 90 > th dose dependent rect. 5 6
21 28.82 radiation 40.0 270 < th dose dependent rect. 4 6
23 28.83 atmosphere 1010.0 90 < th dose independent rect. 11 18
26 28.85 radiation 20.0 270 < th dose independent rect. 4 6
28 28.87 radiation 40.0 270 < th dose dependent rect. 4 11
40 28.95 temperature 10.0 90 > th dose dependent rect. 11 18
42 28.97 atmosphere 1005.0 270 > th dose dependent rect. 23 9
62 29.08 temperature 10.0 270 > th dose dependent rect. 9 18
63 29.08 temperature 10.0 270 > th dose dependent rect. 8 20
74 29.14 atmosphere 995.0 270 > th dose dependent rect. 3 6
87 29.18 radiation 20.0 270 < th dose independent rect. 4 9
92 29.18 humidity 70.0 270 > th dose independent rect. 13 21
114 29.25 atmosphere 1010.0 270 < th dose independent rect. 11 16
131 29.29 radiation 40.0 90 < th dose independent rect. 17 18
147 29.34 precipitation 0.1 90 < th dose independent rect. 11 18
152 29.34 precipitation 0.1 90 < th dose dependent rect. 11 18
156 29.35 temperature 30.0 270 < th dose dependent rect. 16 16
163 29.37 wind 7.0 270 < th dose independent rect. 17 15
167 29.37 atmosphere 1005.0 10 > th dose dependent rect. 24 11
174 29.39 radiation 1.0 270 > th dose independent rect. 8 9
181 29.40 atmosphere 1000.0 90 > th dose independent rect. 5 6
182 29.40 wind 9.0 90 < th dose independent rect. 11 18
188 29.40 radiation 30.0 270 < th dose dependent rect. 2 23
195 29.42 humidity 60.0 90 > th dose independent rect. 5 6
200 29.43 radiation 1.0 270 > th dose independent rect. 8 11
222 29.45 temperature 30.0 90 < th dose independent rect. 5 6
238 29.47 humidity 70.0 270 > th dose independent rect. 4 13
249 29.50 humidity 70.0 270 > th dose independent rect. 3 8
258 29.52 radiation 10.0 720 > th dose independent rect. 8 5
259 29.52 temperature 10.0 90 > th dose independent rect. 5 6
261 29.52 atmosphere 1015.0 90 < th dose independent rect. 5 6
262 29.52 precipitation 0.1 90 < th dose independent rect. 5 6
267 29.52 precipitation 0.1 90 < th dose dependent rect. 5 6
276 29.54 wind 9.0 90 < th dose independent rect. 5 6
287 29.56 radiation 1.0 90 > th dose independent sin 7 NA
316 29.60 temperature 15.0 1440 > th dose independent rect. 12 6
334 29.62 wind 1.0 270 > th dose independent rect. 8 9
340 29.63 wind 7.0 270 < th dose independent rect. 8 9
357 29.65 temperature 30.0 270 < th dose independent rect. 3 7
372 29.67 humidity 70.0 10 > th dose independent rect. 18 17
398 29.70 temperature 15.0 90 > th dose independent rect. 14 15
408 29.70 radiation 40.0 720 < th dose dependent rect. 21 17
429 29.72 atmosphere 1010.0 270 < th dose independent rect. 19 9
435 29.73 radiation 1.0 90 > th dose independent rect. 4 7
451 29.73 atmosphere 1010.0 90 < th dose independent rect. 14 15
462 29.73 precipitation 0.1 270 < th dose independent rect. 9 19
472 29.73 precipitation 0.1 270 < th dose dependent rect. 9 19
478 29.74 temperature 15.0 270 > th dose independent rect. 19 10
504 29.75 temperature 15.0 1440 > th dose independent rect. 12 8
505 29.75 temperature 15.0 270 > th dose independent rect. 8 9
515 29.76 wind 1.0 90 > th dose independent rect. 5 6
524 29.76 radiation 1.0 270 > th dose dependent rect. 8 10
530 29.76 atmosphere 1000.0 30 > th dose dependent rect. 21 14
552 29.77 temperature 10.0 270 > th dose independent rect. 3 7
554 29.77 atmosphere 1015.0 270 < th dose independent rect. 3 7
556 29.77 precipitation 0.1 270 < th dose independent rect. 8 9
558 29.77 radiation 20.0 720 < th dose independent rect. 21 17
564 29.77 precipitation 0.1 270 < th dose dependent rect. 8 9
573 29.78 wind 9.0 270 < th dose independent rect. 3 7
574 29.78 precipitation 0.1 270 < th dose independent rect. 3 7
589 29.78 wind 9.0 270 < th dose independent rect. 9 19
593 29.78 precipitation 0.1 270 < th dose dependent rect. 3 7
600 29.79 humidity 50.0 270 > th dose independent rect. 3 7
609 29.79 humidity 50.0 270 > th dose dependent rect. 4 7
624 29.80 radiation 10.0 720 > th dose independent rect. 17 20
625 29.80 radiation 1.0 720 > th dose dependent rect. 8 5
655 29.82 humidity 50.0 270 > th dose independent rect. 17 15
658 29.82 atmosphere 995.0 270 > th dose independent rect. 10 17
659 29.82 radiation 40.0 720 < th dose independent rect. 21 17
675 29.83 radiation 1.0 90 < th dose independent sin 9 NA
693 29.84 radiation 40.0 720 < th dose dependent sin 5 NA
707 29.85 radiation 10.0 270 > th dose independent sin 22 NA
709 29.85 wind 1.0 270 > th dose independent rect. 3 7
714 29.85 atmosphere 1015.0 270 < th dose independent rect. 8 9
716 29.85 temperature 10.0 270 > th dose independent rect. 17 15
734 29.86 temperature 20.0 270 > th dose independent rect. 24 15
756 29.87 radiation 1.0 270 > th dose dependent sin 22 NA
757 29.87 radiation 1.0 90 < th dose dependent sin 9 NA
760 29.87 temperature 10.0 270 > th dose dependent rect. 19 9
782 29.88 atmosphere 1000.0 30 > th dose dependent rect. 18 17
787 29.89 radiation 1.0 90 > th dose independent rect. 11 6
819 29.90 temperature 30.0 270 < th dose independent rect. 17 15
847 29.91 wind 1.0 270 > th dose independent rect. 10 17
866 29.91 radiation 1.0 270 > th dose dependent rect. 11 23
867 29.92 radiation 40.0 270 < th dose independent sin 4 NA
883 29.92 temperature 15.0 90 > th dose independent rect. 17 18
884 29.92 humidity 70.0 720 > th dose independent rect. 19 18
890 29.92 radiation 30.0 270 < th dose dependent no NA NA
896 29.92 radiation 30.0 270 < th dose dependent rect. 20 23
926 29.94 wind 9.0 90 < th dose dependent rect. 5 6
975 29.97 radiation 20.0 720 < th dose independent sin 5 NA
979 29.97 humidity 90.0 90 < th dose independent rect. 11 6