BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0741300 Os02g0741300|AK120667
(585 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0741300 Glycoside hydrolase, family 47 protein 1080 0.0
Os01g0773600 Glycoside hydrolase, family 47 protein 400 e-111
Os04g0606400 Similar to Mannosyl-oligosaccharide 1,2-alpha-... 173 3e-43
Os05g0209100 Glycoside hydrolase, family 47 protein 89 1e-17
>Os02g0741300 Glycoside hydrolase, family 47 protein
Length = 585
Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/540 (96%), Positives = 519/540 (96%)
Query: 46 LYMRNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPNDYNGSAXX 105
LYMRNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPNDYNGSA
Sbjct: 46 LYMRNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPNDYNGSALT 105
Query: 106 XXXXXXXXXXXGNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILAKEHS 165
GNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILAKEHS
Sbjct: 106 LVESLSSLVVLGNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILAKEHS 165
Query: 166 SHLKDGPYQDQLLHLAENLGSRFLPAFETPTGLPYAWINLKYGVMENXXXXXXXXGCGSL 225
SHLKDGPYQDQLLHLAENLGSRFLPAFETPTGLPYAWINLKYGVMEN GCGSL
Sbjct: 166 SHLKDGPYQDQLLHLAENLGSRFLPAFETPTGLPYAWINLKYGVMENETTETSTSGCGSL 225
Query: 226 ILEMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGKWIEYSSGIGAGVD 285
ILEMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGKWIEYSSGIGAGVD
Sbjct: 226 ILEMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGKWIEYSSGIGAGVD 285
Query: 286 SFYEYLIKAYVLFGSEEYWDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQLTSLQAF 345
SFYEYLIKAYVLFGSEEYWDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQLTSLQAF
Sbjct: 286 SFYEYLIKAYVLFGSEEYWDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQLTSLQAF 345
Query: 346 WPGLQTLLGDVAAANISHREFYNVWQRFGVLPERYLLDFGMLHPTEKYYPLRPEFAESTF 405
WPGLQTLLGDVAAANISHREFYNVWQRFGVLPERYLLDFGMLHPTEKYYPLRPEFAESTF
Sbjct: 346 WPGLQTLLGDVAAANISHREFYNVWQRFGVLPERYLLDFGMLHPTEKYYPLRPEFAESTF 405
Query: 406 YLYQATKDPWYLEVGEAIIGSLNYYTKVDGGFASVRDVSTMKLEDHQHSFFLSETCKYLF 465
YLYQATKDPWYLEVGEAIIGSLNYYTKVDGGFASVRDVSTMKLEDHQHSFFLSETCKYLF
Sbjct: 406 YLYQATKDPWYLEVGEAIIGSLNYYTKVDGGFASVRDVSTMKLEDHQHSFFLSETCKYLF 465
Query: 466 LLYDDSFLRNQNYIFTTEGHPLPIRSTWHEIIPTTHVPSNWTFVKDDSQPFRVSALSSQV 525
LLYDDSFLRNQNYIFTTEGHPLPIRSTWHEIIPTTHVPSNWTFVKDDSQPFRVSALSSQV
Sbjct: 466 LLYDDSFLRNQNYIFTTEGHPLPIRSTWHEIIPTTHVPSNWTFVKDDSQPFRVSALSSQV 525
Query: 526 CPETIFRQSVGSPWESACHVPDVLPTHRCRTDDDCGVEAVSCRRRTCSMAGYCGLWLGVY 585
CPETIFRQSVGSPWESACHVPDVLPTHRCRTDDDCGVEAVSCRRRTCSMAGYCGLWLGVY
Sbjct: 526 CPETIFRQSVGSPWESACHVPDVLPTHRCRTDDDCGVEAVSCRRRTCSMAGYCGLWLGVY 585
>Os01g0773600 Glycoside hydrolase, family 47 protein
Length = 684
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/449 (45%), Positives = 281/449 (62%), Gaps = 24/449 (5%)
Query: 48 MRNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPNDYNGSAXXXX 107
+R++V +MFYHA+D YM +AFP DEL+PL+ DSL G A
Sbjct: 56 LRDEVKDMFYHAFDGYMQHAFPLDELRPLSCQGEDSL---------------GGYALTLI 100
Query: 108 XXXXXXXXXGNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILAKEHSSH 167
G+ F+ V W+ +N+ FD++ +++FE NIR+LGGL+S H++A ++++
Sbjct: 101 DSLDTLALLGDKERFDAAVEWVGKNVRFDINKTVSVFETNIRILGGLLSAHLIASDYATG 160
Query: 168 LKDGPYQDQLLHLAENLGSRFLPAFETPTGLPYAWINLKYGVMENXXXXXXXXGCGSLIL 227
++ Y DQLLHLA +L R LPAF+TPTG+P+ +NL YGV EN G G+L L
Sbjct: 161 MRIQSYDDQLLHLAADLAQRLLPAFDTPTGIPFGSVNLLYGVDENESKITSTAGGGTLTL 220
Query: 228 EMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGKWIEYSSGIGAGVDSF 287
E G LSRLT DS YE ++R +W+ RS L+LVG ++V TG+W + +GIG +DSF
Sbjct: 221 EFGVLSRLTNDSVYERVTKNSVRGIWARRSKLDLVGAHINVFTGEWTQKDAGIGTSIDSF 280
Query: 288 YEYLIKAYVLFGSEEYWDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQL-TSLQAFW 346
YEYL+KAY+LFG EEY +F AY A Y H PWY E +M +G AT W L SLQAFW
Sbjct: 281 YEYLLKAYLLFGDEEYLYIFQEAYKAAMHYLHHDPWYVEVNMNSG-ATVWPLFNSLQAFW 339
Query: 347 PGLQTLLGDVAAANISHREFYNVWQRFGVLPERYLLDFGMLHPTEKYYPLRPEFAESTFY 406
PGLQ L GDV A +H F++VW+++G PE + L + ++ YPLRPE EST++
Sbjct: 340 PGLQVLAGDVDPAIRTHAAFFSVWKKYGFTPEGFNLATSTVQNGQRSYPLRPELIESTYW 399
Query: 407 LYQATKDPWYLEVGEAIIGSLNYYTKVDGGFASVRDVSTMKLEDHQHSFFLSETCKYLFL 466
L++AT+D YL+VG I+ SL Y K G+ + DV T + +DH SFFL+ET KYL+L
Sbjct: 400 LFKATRDYRYLDVGRDILASLQYGAKCPCGYCHISDVETHQQDDHMESFFLAETVKYLWL 459
Query: 467 LYD-----DSFLRNQ--NYIFTTEGHPLP 488
L+D D+ + N YIF+TEGH LP
Sbjct: 460 LFDLAAGPDNIVENGPYKYIFSTEGHLLP 488
>Os04g0606400 Similar to Mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC
3.2.1.113)
Length = 572
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 220/466 (47%), Gaps = 52/466 (11%)
Query: 49 RNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPNDYNGSAXXXXX 108
R KV E HA+++Y+ YA+ DEL+P +K+ +S LG ++ L Y
Sbjct: 104 REKVKEAMAHAWNSYVKYAWGMDELQPQSKNGVNSFGGLGATLVDSLDTLY--------- 154
Query: 109 XXXXXXXXGNLTEFERGVLWLSENLTFDVDARINLFECNIRLLGGLISGHILAKEHSSHL 168
G EF+R W++++L+FD D ++FE IR++GGL+S + L+ +
Sbjct: 155 ------IMGLKDEFQRARDWVADSLSFDKDYDASVFETTIRVVGGLLSAYDLSGDKV--- 205
Query: 169 KDGPYQDQLLHLAENLGSRFLPAFETPTGLPYAWINLKYGVMEN---XXXXXXXXGCGSL 225
L A+++ R LPA++TP+G+PY INL +G N G+
Sbjct: 206 --------FLEKAKDITDRLLPAWDTPSGIPYNRINLAHGRAHNPGWTNGDSILADSGTE 257
Query: 226 ILEMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGKWIEYSSGIGAGVD 285
LE ALS+ TGD +Y+ A +R+L + S L+ ++ +G + GA D
Sbjct: 258 QLEFIALSQRTGDPKYQQKAENVIRQLQKIYPSDGLLPIYINPHSGTASYSTITFGAMGD 317
Query: 286 SFYEYLIKAYVLFGSEEY-------WDMFHSAYLAVQKYFRHGPWYHEADMRTGEATHWQ 338
SFYEYL+K +V E+ W+ L++ K +Y+ + G + +
Sbjct: 318 SFYEYLLKVWVQGNKTEHVKHYRQMWETSMEGLLSLTKKTTPSNYYYICEKNGGSLSD-K 376
Query: 339 LTSLQAFWPGLQTLLGD-----------VAAANISHREFYNVWQRF--GVLPERYLLDFG 385
+ L F PG+ L + A R YN +Q + E Y G
Sbjct: 377 MDELACFAPGMLALGASGYEETEKAEEIMNLAKELARTCYNFYQTTPTKLAGENYFFHTG 436
Query: 386 M-LHPTEKYYPLRPEFAESTFYLYQATKDPWYLEVGEAIIGSLNYYTKVDGGFASVRDVS 444
++ + LRPE ES YL++ T + Y + G I + ++++ G+ +RDV+
Sbjct: 437 QDMNVGTSWNILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESGYVGLRDVN 496
Query: 445 TMKLEDHQHSFFLSETCKYLFLLYD-DSFLRNQNYIFTTEGHPLPI 489
T + ++ SFFL+ET KYL+LL+ S + ++F TE HPL I
Sbjct: 497 TGEKDNMMQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLRI 542
>Os05g0209100 Glycoside hydrolase, family 47 protein
Length = 645
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 38/273 (13%)
Query: 49 RNKVLEMFYHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNLEHLPNDYNGSAXXXXX 108
+ KV E F HA+ Y YA +DEL PLT+ D L LG ++ L
Sbjct: 139 QKKVKEAFEHAWSGYRNYAMGYDELMPLTRRGIDGLGGLGATVVDSLDT----------- 187
Query: 109 XXXXXXXXGNLTEFERGVLWLSENL--TFDVDARINLFECNIRLLGGLISGHILAKEHSS 166
G W+ +NL ++NLFE IR+LGGL+S + L+ +
Sbjct: 188 ----AIIMGADDVVSEASKWIEDNLMKKLSEKGQVNLFETTIRVLGGLLSAYHLSGGDKA 243
Query: 167 HLKDG-------PYQDQLLHLAENLGSRFLPAF-ETPTGLPYAWINLKYGVMENXXXXXX 218
G ++LL ++++L R L AF +PT +P + + V+ +
Sbjct: 244 RGDSGIPMTSKRANPERLLEVSKDLADRLLLAFTSSPTAIPLSDV-----VLRDRTAHAA 298
Query: 219 XXGCGS------LILEMGALSRLTGDSRYEAAALRALRKLWSMRSSLNLVGTTLDVLTGK 272
G S L LE LS ++GD +Y+ A++ L + ++ + LV ++ +G+
Sbjct: 299 PDGLSSTSEATTLQLEYSYLSTISGDPKYDLEAMKVLEHMRTLPTVEGLVPIYINPSSGQ 358
Query: 273 WIEYSSGIGAGVDSFYEYLIKAYVLFGSEEYWD 305
+ + +G+ DS+YEYL+K +V E Y D
Sbjct: 359 FSGENIRLGSRGDSYYEYLLKVWV--QQERYRD 389
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 386 MLHPTEKYYPLRPEFAESTFYLYQATKDPWYLEVGEAIIGSLNYYTKVD-GGFASVRDVS 444
++ P +++ LRPE ES F LY+ T+DP Y E G I + YT+VD GG+ S+ DV+
Sbjct: 527 IIKPLDRHNLLRPETVESLFVLYRITEDPKYREWGWQIFQAFEKYTRVDSGGYTSLDDVT 586
Query: 445 TM--KLEDHQHSFFLSETCKYLFLLYDDS-FLRNQNYIFTTEGHPLPIRSTWHEI 496
++ D +FFL ET KYL+LL+ +S L Y+F TE HPLPI + +I
Sbjct: 587 SLPPPRRDKMETFFLGETLKYLYLLFGESNILPLDKYVFNTEAHPLPIIQSAQQI 641
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,963,337
Number of extensions: 809468
Number of successful extensions: 1389
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1379
Number of HSP's successfully gapped: 5
Length of query: 585
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 479
Effective length of database: 11,501,117
Effective search space: 5509035043
Effective search space used: 5509035043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)