BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0602100 Os04g0602100|AK069838
(353 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0602100 Haem peroxidase family protein 696 0.0
Os04g0223300 Similar to Peroxisome type ascorbate peroxidase 83 3e-16
Os03g0285700 Similar to L-ascorbate peroxidase 69 7e-12
Os08g0522400 Haem peroxidase family protein 67 2e-11
>Os04g0602100 Haem peroxidase family protein
Length = 353
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/353 (96%), Positives = 342/353 (96%)
Query: 1 MAGASFLSTVRQXXXXXXXXXXXRGSASSVSSPARRHAHILVCCHATAQEEPVRFRRRDL 60
MAGASFLSTVRQ RGSASSVSSPARRHAHILVCCHATAQEEPVRFRRRDL
Sbjct: 1 MAGASFLSTVRQPPAPPPPLLAPRGSASSVSSPARRHAHILVCCHATAQEEPVRFRRRDL 60
Query: 61 IGGCLTTAIGLELVEGSTGFTGVATAADLIERRQRSEFQSSIKSTLATAITAKKELIPSL 120
IGGCLTTAIGLELVEGSTGFTGVATAADLIERRQRSEFQSSIKSTLATAITAKKELIPSL
Sbjct: 61 IGGCLTTAIGLELVEGSTGFTGVATAADLIERRQRSEFQSSIKSTLATAITAKKELIPSL 120
Query: 121 LTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEIDSYSKGGP 180
LTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEIDSYSKGGP
Sbjct: 121 LTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEIDSYSKGGP 180
Query: 181 IAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKLFGRQDTQ 240
IAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKLFGRQDTQ
Sbjct: 181 IAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKLFGRQDTQ 240
Query: 241 EPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMSVFLGPDQAATEERLIADKDCRPW 300
EPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMSVFLGPDQAATEERLIADKDCRPW
Sbjct: 241 EPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMSVFLGPDQAATEERLIADKDCRPW 300
Query: 301 VEKYQRSRETVSRTDYEVDLITTLTKLSSLGQKINYEAYTYPKQKIDLGKLKL 353
VEKYQRSRETVSRTDYEVDLITTLTKLSSLGQKINYEAYTYPKQKIDLGKLKL
Sbjct: 301 VEKYQRSRETVSRTDYEVDLITTLTKLSSLGQKINYEAYTYPKQKIDLGKLKL 353
>Os04g0223300 Similar to Peroxisome type ascorbate peroxidase
Length = 291
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 34/169 (20%)
Query: 109 AITAKKELIPSLLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEA 168
A+ A K P +L LA +DA TYDKATK+GGPNGS+R E S N+G+ A+DLL
Sbjct: 24 ALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPM 83
Query: 169 KKEIDSYSKGGPIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWG 228
K+ K I +ADL Q A A+++T GG
Sbjct: 84 KQ------KHPKITYADLYQLAGVVAVEVT---------GGP------------------ 110
Query: 229 LFDKLFGRQDTQEPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMS 277
D + GR+D+ + EGR+PD K + +++ F +GL + + +S
Sbjct: 111 TIDYVPGRRDSSDSPEEGRLPDAKKGAAH-LREVFYRMGLSDKDIVALS 158
>Os03g0285700 Similar to L-ascorbate peroxidase
Length = 250
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 115/276 (41%), Gaps = 79/276 (28%)
Query: 96 SEFQSSIKSTLAT--AITAKKELIPSLLTLALNDAMTYDKATKSGGPNGSVRLSAEISRP 153
+E+Q +++ A+ A+K P +L LA + A T+D ++K+GGP G+++ AE+S
Sbjct: 10 AEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHA 69
Query: 154 ENSGLSAAVDLLVEAKKEIDSYSKGGPIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEK 213
N+GL AV +L K+EI + I++AD Q A A+++
Sbjct: 70 ANAGLDIAVRMLEPIKEEIPT------ISYADFYQLAGVVAVEV---------------- 107
Query: 214 GRTLYSAYGSNGQWGLFDKLFGRQDTQEPDPEGRVPDWSKASVQEMKDKFVA-VGLGPRQ 272
S G F GR+D P PEGR+PD +K S ++ F A +GL +
Sbjct: 108 ---------SGGPAVPFHP--GREDKPAPPPEGRLPDATKGS-DHLRQVFGAQMGLSDQD 155
Query: 273 LAVM-------------SVFLGP------------------------DQAATEERLIADK 295
+ + S F GP Q +++ L++D
Sbjct: 156 IVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDP 215
Query: 296 DCRPWVEKYQRSRETVSRTDYEVDLITTLTKLSSLG 331
RP VEKY + E L KLS LG
Sbjct: 216 AFRPLVEKYAADEKAFFEDYKEAHL-----KLSELG 246
>Os08g0522400 Haem peroxidase family protein
Length = 213
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 33/158 (20%)
Query: 120 LLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEIDSYSKGG 179
+L LA +DA T+D A KSGG NGS+ E+ RPEN+GL+ ++ +L +AK+ ID +
Sbjct: 1 MLRLAFHDAGTFDIADKSGGMNGSIIY--EVDRPENTGLNKSIKVLGKAKEVIDLVQQ-- 56
Query: 180 PIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKLFGRQDT 239
+++ADLI A ++A CGG E R GR D+
Sbjct: 57 -VSWADLIAVAGAE---------SVALCGGPEIPVR------------------LGRLDS 88
Query: 240 QEPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMS 277
DP G++P+ +K F G +++ V+S
Sbjct: 89 STADPAGKLPE-ETLDATALKTLFSKKGFSTQEMVVLS 125
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,836,826
Number of extensions: 434590
Number of successful extensions: 1086
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1086
Number of HSP's successfully gapped: 4
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)