Os04g0602100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase family protein.
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Os04g0602100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.4 | 0.586 | 11.7 | -3.45 | 0.222 | -0.53 | 1.68 | -1.13 | -1.34 | 23.3 | 29.27 | 1416 | -- | -- |
| 158.17 | 0.586 | 11.7 | -3.48 | 0.221 | -0.579 | 1.77 | -- | -1.35 | 23.3 | 29.26 | 1415 | -- | -- |
| 167.49 | 0.603 | 11.7 | -3.47 | 0.218 | -0.525 | -- | -1.3 | -1.34 | 23.3 | 29.27 | 1403 | -- | -- |
| 171.18 | 0.609 | 11.8 | -3.54 | 0.247 | -0.587 | -- | -- | -1.4 | 23.5 | 29.27 | 1415 | -- | -- |
| 168.83 | 0.605 | 11.7 | -3.51 | -- | -0.535 | -- | -1.46 | -1.36 | -- | 29.28 | 1293 | -- | -- |
| 169 | 0.609 | 11.7 | -3.48 | 0.274 | -- | 1.8 | -- | -1.27 | 23.5 | -- | -- | -- | -- |
| 182.92 | 0.633 | 11.7 | -3.55 | 0.267 | -- | -- | -- | -1.27 | 23.9 | -- | -- | -- | -- |
| 172.99 | 0.613 | 11.8 | -3.63 | -- | -0.582 | -- | -- | -1.4 | -- | 30.31 | 1310 | -- | -- |
| 302.6 | 0.81 | 11.6 | -- | 0.00782 | -2.39 | -- | -- | -0.941 | 23.3 | 59.96 | 25922 | -- | -- |
| 187.41 | 0.64 | 11.7 | -3.54 | -- | -- | -- | -- | -1.27 | -- | -- | -- | -- | -- |
| 514.92 | 1.06 | 11.6 | -- | 0.229 | -- | -- | -- | -0.88 | 23 | -- | -- | -- | -- |
| 272.94 | 0.769 | 11.5 | -- | -- | -2.55 | -- | -- | -0.382 | -- | 59.96 | 47520 | -- | -- |
| 518.18 | 1.06 | 11.6 | -- | -- | -- | -- | -- | -0.878 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 3 | 150.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 4 | 150.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 5 | 150.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 7 | 151.58 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 13 | 151.75 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 33 | 152.31 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 39 | 152.46 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 42 | 152.60 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 68 | 153.11 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 12 | 4 |
| 78 | 153.30 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 83 | 153.46 | temperature | 30.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 94 | 153.58 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 108 | 153.91 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 112 | 153.96 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 123 | 154.13 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 128 | 154.22 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 129 | 154.25 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 130 | 154.25 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 131 | 154.25 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 151 | 154.46 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 12 | 3 |
| 171 | 154.53 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 176 | 154.53 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 177 | 154.53 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 178 | 154.53 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 179 | 154.53 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 224 | 154.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 233 | 154.75 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 235 | 154.79 | wind | 1.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 239 | 154.82 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 246 | 154.85 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 249 | 154.86 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 288 | 154.91 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 292 | 154.92 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 294 | 154.93 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 299 | 154.95 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 315 | 155.00 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 323 | 155.12 | radiation | 30.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 325 | 155.13 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 3 |
| 360 | 155.26 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 12 | 3 |
| 367 | 155.31 | radiation | 30.0 | 1440 | > th | dose independent | sin | 5 | NA |
| 372 | 155.34 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 382 | 155.39 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 434 | 155.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 435 | 155.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 445 | 155.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 11 |
| 468 | 155.57 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 472 | 155.57 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 546 | 155.59 | radiation | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 642 | 155.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 643 | 155.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 645 | 155.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 649 | 155.75 | temperature | 30.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 669 | 155.77 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 679 | 155.81 | radiation | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 787 | 155.81 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 828 | 155.83 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 857 | 155.89 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 12 | 14 |
| 895 | 155.91 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 930 | 156.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 933 | 156.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 20 |
| 935 | 156.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 957 | 156.10 | temperature | 30.0 | 10 | > th | dose independent | rect. | 12 | 6 |