BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0602100 Os04g0602100|AK069838
(353 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09010.1 | chr4:5777502-5779338 REVERSE LENGTH=350 432 e-121
AT4G35000.1 | chr4:16665007-16667541 REVERSE LENGTH=288 74 1e-13
AT3G09640.1 | chr3:2956301-2958163 FORWARD LENGTH=252 67 1e-11
AT4G35970.1 | chr4:17028651-17030205 FORWARD LENGTH=280 67 2e-11
AT4G32320.1 | chr4:15602777-15605234 FORWARD LENGTH=330 66 3e-11
AT1G07890.3 | chr1:2438005-2439435 FORWARD LENGTH=251 63 2e-10
AT1G77490.1 | chr1:29117688-29120046 FORWARD LENGTH=427 54 1e-07
AT4G08390.1 | chr4:5314999-5317071 FORWARD LENGTH=373 53 3e-07
>AT4G09010.1 | chr4:5777502-5779338 REVERSE LENGTH=350
Length = 349
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/356 (62%), Positives = 261/356 (73%), Gaps = 10/356 (2%)
Query: 1 MAGASFLSTVRQXXXXXXXXXXXRGSASSVSSPARRHAHILVCCHATAQ--EEPVRFRRR 58
M G SFLSTV +++SS + R A ++ C Q E + F RR
Sbjct: 1 MGGVSFLSTV-----PSFTNTTNHQHLTTLSSSSHRSA-VIRCSKIEPQVSGESLAFHRR 54
Query: 59 DLIGGCLTTAIGLELV-EGSTGFTGVATAADLIERRQRSEFQSSIKSTLATAITAKKELI 117
D++ TA+G+EL+ G G A AADL +RRQRSEFQS IK L+T I AK EL+
Sbjct: 55 DVLK-LAGTAVGMELIGNGFINNVGDAKAADLNQRRQRSEFQSKIKILLSTTIKAKPELV 113
Query: 118 PSLLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEIDSYSK 177
PSLL LALNDAMTYDKATKSGG NGS+R S+E+SR EN GLS + L+ E KKEIDS SK
Sbjct: 114 PSLLKLALNDAMTYDKATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKEIDSISK 173
Query: 178 GGPIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKLFGRQ 237
GGPI++AD+IQ A QSA+K T++ +AI KCGGNEEKG LY+AYGS GQWGLFD+ FGR
Sbjct: 174 GGPISYADIIQLAGQSAVKFTYLASAIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRS 233
Query: 238 DTQEPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMSVFLGPDQAATEERLIADKDC 297
D E DPEGRVP W KA+VQEMKDKF+AVGLGPRQLAVMS FLGPDQAATE+ L D
Sbjct: 234 DATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQV 293
Query: 298 RPWVEKYQRSRETVSRTDYEVDLITTLTKLSSLGQKINYEAYTYPKQKIDLGKLKL 353
PWV+KYQRSRETVS+TDYEVDLIT TKLS LGQ+IN+EAYTYP ++I+L KLKL
Sbjct: 294 APWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERINLSKLKL 349
>AT4G35000.1 | chr4:16665007-16667541 REVERSE LENGTH=288
Length = 287
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 38/171 (22%)
Query: 109 AITAKKELIPSLLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEA 168
++ A K P +L LA +DA TYD +K+GGPNGS+R E + NSGL A+DL
Sbjct: 23 SLIANKNCAPIMLRLAWHDAGTYDAQSKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGV 82
Query: 169 KKEIDSYSKGGPIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWG 228
K +K I +ADL Q A A+++T GG
Sbjct: 83 K------AKHPKITYADLYQLAGVVAVEVT---------GGP------------------ 109
Query: 229 LFDKLF--GRQDTQEPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMS 277
D +F GR+D+ EGR+PD +K Q ++D F +GL + + +S
Sbjct: 110 --DIVFVPGRKDSNVCPKEGRLPD-AKQGFQHLRDVFYRMGLSDKDIVALS 157
>AT3G09640.1 | chr3:2956301-2958163 FORWARD LENGTH=252
Length = 251
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 36/170 (21%)
Query: 109 AITAKKELIPSLLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEA 168
+ A+K P +L LA + A T+D TK+GGP G++R E++ N+GL AV LL
Sbjct: 26 GLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLL--- 82
Query: 169 KKEIDSYSKGGPI-AFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQW 227
D + PI ++AD Q A A+++T GG E
Sbjct: 83 ----DPIKELFPILSYADFYQLAGVVAVEIT---------GGPEIPFHP----------- 118
Query: 228 GLFDKLFGRQDTQEPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMS 277
GR D EP PEGR+P +K V ++D F +GL + + +S
Sbjct: 119 -------GRLDKVEPPPEGRLPQATKG-VDHLRDVFGRMGLNDKDIVALS 160
>AT4G35970.1 | chr4:17028651-17030205 FORWARD LENGTH=280
Length = 279
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 57/250 (22%)
Query: 109 AITAKKELIPSLLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEA 168
A+ + + P +L LA +DA TYD K+GG NGS+R E++RP N GL AV E
Sbjct: 22 ALISSRNCAPIMLRLAWHDAGTYDAKKKTGGANGSIRFKEELNRPHNKGLEKAVAFCEEV 81
Query: 169 KKEIDSYSKGGPIAFADLIQFAAQSALKLT------FV----DAAIAKCG--GNEEKG-- 214
K +K +++ADL Q A A+++T F DA A G N +G
Sbjct: 82 K------AKHPRVSYADLYQLAGVVAVEVTGGPAIPFTPGRKDADSADDGELPNPNEGAS 135
Query: 215 --RTLYSAYGSNGQWGLFDK---------LFGRQDTQEPDPEGRVPDWSKASVQEMKDKF 263
RTL+S + GL D+ GR + D EG W++ ++ F
Sbjct: 136 HLRTLFS------RMGLLDRDIVALSGGHTLGRAHKERSDFEG---PWTQDPLKFDNSYF 186
Query: 264 VAV--GLGPRQLAVMSVFLGPDQAATEERLIADKDCRPWVEKYQRSRETVSRTDYEVDLI 321
V + G P L Q T++ L+ D P+V+ Y + + + Y +
Sbjct: 187 VELLKGETPGLL----------QLKTDKALLDDPKFHPFVKLYAKDEDMFFKA-YAI--- 232
Query: 322 TTLTKLSSLG 331
+ KLS LG
Sbjct: 233 -SHKKLSELG 241
>AT4G32320.1 | chr4:15602777-15605234 FORWARD LENGTH=330
Length = 329
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 71/249 (28%)
Query: 120 LLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEIDSYSKGG 179
+L L +DA T++ SGG NGS+ + E+ RPEN GL ++ +L +AK ++D
Sbjct: 117 VLRLVFHDAGTFELDDHSGGINGSI--AYELERPENIGLKKSLKVLAKAKVKVDEIQ--- 171
Query: 180 PIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKLFGRQDT 239
P+++AD+I A A+ + CGG + GR D+
Sbjct: 172 PVSWADMISVAGSEAVSI---------CGGPT------------------IPVVLGRLDS 204
Query: 240 QEPDPEGRVPDWSKASVQEMKDKFVAVGLGPRQLAVMS---------------------- 277
+PDPEG++P S +K+ F G ++L +S
Sbjct: 205 AQPDPEGKLPP-ETLSASGLKECFKRKGFSTQELVALSGAHTIGSKGFGDPTVFDNAYYK 263
Query: 278 VFLGPDQAAT-----------EERLIADKDCRPWVEKYQRSRETVSRTDYEVDLITTLTK 326
+ L +T + L+ D +C WV++Y ++ + D K
Sbjct: 264 ILLEKPWTSTSKMTSMVGLPSDHALVQDDECLRWVKRYAEDQD-----KFFEDFTNAYIK 318
Query: 327 LSSLGQKIN 335
L + G K N
Sbjct: 319 LVNSGAKWN 327
>AT1G07890.3 | chr1:2438005-2439435 FORWARD LENGTH=251
Length = 250
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 35/169 (20%)
Query: 110 ITAKKELIPSLLTLALNDAMTYDKATKSGGPNGSVRLSAEISRPENSGLSAAVDLLVEAK 169
+ A+K P ++ LA + A T+D +++GGP G++R AE + NSG+ A+ LL +
Sbjct: 26 LIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIR 85
Query: 170 KEIDSYSKGGPIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGL 229
++ + I+FAD Q A A+++T GG +
Sbjct: 86 EQFPT------ISFADFHQLAGVVAVEVT---------GGPDIPFHP------------- 117
Query: 230 FDKLFGRQDTQEPDPEGRVPDWSKASVQEMKDKFVA-VGLGPRQLAVMS 277
GR+D +P PEGR+PD +K ++D F +GL + + +S
Sbjct: 118 -----GREDKPQPPPEGRLPDATKG-CDHLRDVFAKQMGLSDKDIVALS 160
>AT1G77490.1 | chr1:29117688-29120046 FORWARD LENGTH=427
Length = 426
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 41/168 (24%)
Query: 118 PSLLTLALNDAMTYDKATKS----GGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEID 173
P L+ L +DA TY+K + GG NGS+R AE+ N+GL A+ L+ K D
Sbjct: 104 PILVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEAELKHAANAGLLNALKLIQPLK---D 160
Query: 174 SYSKGGPIAFADLIQFAAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKL 233
Y I++ADL Q A+ + AI + GG + +
Sbjct: 161 KYPN---ISYADLFQLASAT---------AIEEAGGPDIPMK------------------ 190
Query: 234 FGRQDTQEPD---PEGRVPDWSKAS-VQEMKDKFVAVGLGPRQLAVMS 277
+GR D P+ EGR+PD S ++D F +GL +++ +S
Sbjct: 191 YGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDKEIVALS 238
>AT4G08390.1 | chr4:5314999-5317071 FORWARD LENGTH=373
Length = 372
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 46/212 (21%)
Query: 74 VEGSTGFTGVATAADLIERRQRSEFQSSIKSTLATAITAKKELIPSLLTLALNDAMTYDK 133
V S T AT + + Q + IK L+T K P L+ L +DA TY+K
Sbjct: 86 VNRSFNSTTAATKSSSSDPDQLKNAREDIKELLST-----KFCHPILVRLGWHDAGTYNK 140
Query: 134 ATKS----GGPNGSVRLSAEISRPENSGLSAAVDLLVEAKKEIDSYSKGGPIAFADLIQF 189
K GG NGS+R E+ N+GL A++L+ + K++ YS I++ADL Q
Sbjct: 141 NIKEWPQRGGANGSLRFDIELKHAANAGLVNALNLIKDIKEK---YSG---ISYADLFQL 194
Query: 190 AAQSALKLTFVDAAIAKCGGNEEKGRTLYSAYGSNGQWGLFDKLFGRQDTQEPD---PEG 246
A+ + AI + GG + + +GR D P+ EG
Sbjct: 195 ASAT---------AIEEAGGPKIPMK------------------YGRVDASGPEDCPEEG 227
Query: 247 RVPDWSKAS-VQEMKDKFVAVGLGPRQLAVMS 277
R+PD S +++ F +GL + + +S
Sbjct: 228 RLPDAGPPSPATHLREVFYRMGLDDKDIVALS 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,779,730
Number of extensions: 266222
Number of successful extensions: 636
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 8
Length of query: 353
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,364,969
Effective search space: 2116337157
Effective search space used: 2116337157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)