BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0592600 Os04g0592600|AK071102
         (306 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0592600  Conserved hypothetical protein                      426   e-120
Os02g0693500  Conserved hypothetical protein                      359   1e-99
Os03g0703900  Conserved hypothetical protein                      252   2e-67

>Os04g0592600 Conserved hypothetical protein
          Length = 306

 Score =  426 bits (1096), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/268 (81%), Positives = 219/268 (81%)

Query: 39  GPRIFCKGVXXXXXXXXXXXFPVWEXXXXXXXXXXXXXXXXXXYLSMPDSDYSFLKLPRN 98
           GPRIFCKGV           FPVWE                  YLSMPDSDYSFLKLPRN
Sbjct: 39  GPRIFCKGVRRREEMGREERFPVWEAALGAGVAAAFATGLVGVYLSMPDSDYSFLKLPRN 98

Query: 99  LEELQILTGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRXXXX 158
           LEELQILTGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLR    
Sbjct: 99  LEELQILTGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRGVAL 158

Query: 159 XXXXXXXXXXXXXXXXKLIGKPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLP 218
                           KLIGKPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLP
Sbjct: 159 VVFAASAGASSCFFLSKLIGKPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLP 218

Query: 219 NTFINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALGELTSLSDLYDTQSIALLFL 278
           NTFINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALGELTSLSDLYDTQSIALLFL
Sbjct: 219 NTFINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALGELTSLSDLYDTQSIALLFL 278

Query: 279 IGIVSVTPTLLGKDEAQEKTTEIAVTAS 306
           IGIVSVTPTLLGKDEAQEKTTEIAVTAS
Sbjct: 279 IGIVSVTPTLLGKDEAQEKTTEIAVTAS 306



>Os02g0693500 Conserved hypothetical protein
          Length = 281

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/249 (73%), Positives = 198/249 (79%), Gaps = 1/249 (0%)

Query: 59  FPVWEXXXXXXXXXXXXXXXXXXYLSMPDSDYSFLKLPRNLEELQILTGHLENYTSDYTI 118
           FPVWE                  YLSMP SDYSFLKLP+NL+ELQILT HLE+YTSDYT+
Sbjct: 33  FPVWEAALLAGVAAAFATGLVGVYLSMPHSDYSFLKLPKNLQELQILTDHLEDYTSDYTV 92

Query: 119 QVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRXXXXXXXXXXXXXXXXXXXXKLIG 178
           QVLVGYC+VYIFMQTFMIPGTIFMSLLAG+LFGQL                     KLIG
Sbjct: 93  QVLVGYCAVYIFMQTFMIPGTIFMSLLAGALFGQLGGVALVVFAATAGASSCYFLSKLIG 152

Query: 179 KPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFLL 238
           KPLVFSLWPDKL FFQKQVAKRREKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIF L
Sbjct: 153 KPLVFSLWPDKLGFFQKQVAKRREKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFFL 212

Query: 239 ATLIGLIPASYVTVRAGIALGELTSLSDLYDTQSIALLFLIGIVSVTPTLLGKDEAQE-K 297
           AT IGLIPA+YVTVRAGIALG+L+SLSDLYD QSIALLFLIG+VSVTPTLLGK+E Q+ K
Sbjct: 213 ATFIGLIPAAYVTVRAGIALGDLSSLSDLYDKQSIALLFLIGVVSVTPTLLGKNEKQQGK 272

Query: 298 TTEIAVTAS 306
             E+  ++S
Sbjct: 273 GPEMVASSS 281



>Os03g0703900 Conserved hypothetical protein
          Length = 277

 Score =  252 bits (644), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/216 (55%), Positives = 160/216 (74%), Gaps = 1/216 (0%)

Query: 82  YLSMPDSDYS-FLKLPRNLEELQILTGHLENYTSDYTIQVLVGYCSVYIFMQTFMIPGTI 140
           + + P  ++   L+LPR+L ++++L  +L  Y  DY    ++GYCS+YIFMQTFMIPGTI
Sbjct: 62  FRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTI 121

Query: 141 FMSLLAGSLFGQLRXXXXXXXXXXXXXXXXXXXXKLIGKPLVFSLWPDKLMFFQKQVAKR 200
           FMSLLAG+LFG ++                    KLIG+PL+  LWP+KL +FQ ++AKR
Sbjct: 122 FMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAKR 181

Query: 201 REKLLNYMLFLRVTPTLPNTFINLASPIVDVPYHIFLLATLIGLIPASYVTVRAGIALGE 260
           +EKLLNYMLFLR+TPTLPNTFIN+ASPIVD+P+HIF  ATLIGLIPASY+TV+AG ALG+
Sbjct: 182 KEKLLNYMLFLRITPTLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALGD 241

Query: 261 LTSLSDLYDTQSIALLFLIGIVSVTPTLLGKDEAQE 296
           L SL +LYD++++ +LFLIG V+V PT+L +    E
Sbjct: 242 LRSLRELYDSKTLVILFLIGTVAVAPTILKRKRIYE 277



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,409,798
Number of extensions: 209048
Number of successful extensions: 525
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 3
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)