BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0578600 Os04g0578600|AB126085
(525 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0578600 Ferric reductase-like transmembrane component ... 962 0.0
Os04g0444800 Ferric reductase-like transmembrane component ... 253 2e-67
Os09g0438000 Similar to RbohAOsp (Fragment) 69 8e-12
Os05g0528000 Similar to RbohAOsp (Fragment) 68 2e-11
AK099714 66 8e-11
>Os04g0578600 Ferric reductase-like transmembrane component family protein
Length = 525
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/525 (92%), Positives = 488/525 (92%)
Query: 1 MRNVLRWQAKLDRAALRLGHVGSFCCAFLFFPVARGSSLLPLIGLTSEASIKYHVWLGNL 60
MRNVLRWQAKLDRAALRLGHVGSFCCAFLFFPVARGSSLLPLIGLTSEASIKYHVWLGNL
Sbjct: 1 MRNVLRWQAKLDRAALRLGHVGSFCCAFLFFPVARGSSLLPLIGLTSEASIKYHVWLGNL 60
Query: 61 VMLFFTAHGLCYIVFWASTDQIHEMLKWTRTKVANVPGELALLSGLVMWVTALPRVRRQM 120
VMLFFTAHGLCYIVFWASTDQIHEMLKWTRTKVANVPGELALLSGLVMWVTALPRVRRQM
Sbjct: 61 VMLFFTAHGLCYIVFWASTDQIHEMLKWTRTKVANVPGELALLSGLVMWVTALPRVRRQM 120
Query: 121 FELFFYAHHLYALFLVLFALHVGVAFFCSILPGVFLFMVDRYXXXXXXXXXXXXXXXXXX 180
FELFFYAHHLYALFLVLFALHVGVAFFCSILPGVFLFMVDRY
Sbjct: 121 FELFFYAHHLYALFLVLFALHVGVAFFCSILPGVFLFMVDRYLRFLQSRVRVRLVSARLL 180
Query: 181 XCDAVELNFCKSPHLTHSPMSTVFINVPCVSRLQWHPFTVTSSSSLEPDRLSVVVKRAGR 240
CDAVELNFCKSPHLTHSPMSTVFINVPCVSRLQWHPFTVTSSSSLEPDRLSVVVKRAGR
Sbjct: 181 ACDAVELNFCKSPHLTHSPMSTVFINVPCVSRLQWHPFTVTSSSSLEPDRLSVVVKRAGR 240
Query: 241 WTEKLYETISSLPPSQPGHLDVSVEGPYSQATPASFLQYDSLVMISGGGGITPFISVIRE 300
WTEKLYETISSLPPSQPGHLDVSVEGPYSQATPASFLQYDSLVMISGGGGITPFISVIRE
Sbjct: 241 WTEKLYETISSLPPSQPGHLDVSVEGPYSQATPASFLQYDSLVMISGGGGITPFISVIRE 300
Query: 301 LVHRSGTAAEAATPSLLLIAVFKTSADLAMLDLIVPASGGFSDISRLELRIEAFVTRXXX 360
LVHRSGTAAEAATPSLLLIAVFKTSADLAMLDLIVPASGGFSDISRLELRIEAFVTR
Sbjct: 301 LVHRSGTAAEAATPSLLLIAVFKTSADLAMLDLIVPASGGFSDISRLELRIEAFVTRESV 360
Query: 361 XXXXXXXXXXXXXXXXLVQAVAVDAPIAPVLGHNGWSARRVVSSSFFIFLLLVGAVQRLY 420
LVQAVAVDAPIAPVLGHNGWSARRVVSSSFFIFLLLVGAVQRLY
Sbjct: 361 PSAAMSSQSPQSAXESLVQAVAVDAPIAPVLGHNGWSARRVVSSSFFIFLLLVGAVQRLY 420
Query: 421 IYPVDGNSNRVYPWSARTLLNLLLLCVGIAVAASAAVLWNKRRRAEEAKQVENVATPASS 480
IYPVDGNSNRVYPWSARTLLNLLLLCVGIAVAASAAVLWNKRRRAEEAKQVENVATPASS
Sbjct: 421 IYPVDGNSNRVYPWSARTLLNLLLLCVGIAVAASAAVLWNKRRRAEEAKQVENVATPASS 480
Query: 481 PATWLDKPRRGDAEVGRRPDLRSTMHRSILFSFWVELVLLPLKSA 525
PATWLDKPRRGDAEVGRRPDLRSTMHRSILFSFWVELVLLPLKSA
Sbjct: 481 PATWLDKPRRGDAEVGRRPDLRSTMHRSILFSFWVELVLLPLKSA 525
>Os04g0444800 Ferric reductase-like transmembrane component family protein
Length = 758
Score = 253 bits (647), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 242/466 (51%), Gaps = 18/466 (3%)
Query: 15 ALRLGHVGSFCCAFLFFPVARGSSLLPLIGLTSEASIKYHVWLGNLVMLFFTAHGLCYIV 74
LR G +G FC AFLF PV+RGS LL LI + E + +YHVWLG+L M FT HGLCY++
Sbjct: 188 GLRFGSIGLFCMAFLFLPVSRGSVLLRLIDIPFEHATRYHVWLGHLTMALFTLHGLCYVI 247
Query: 75 FWA-STDQIHEMLKWTRTKVANVPGELALLSGLVMWVTALPRVRRQMFELFFYAHHLYAL 133
W+ + + E+ W VAN+PG ++L +GL+MWVT+L VR+ FELFFY H LY +
Sbjct: 248 AWSLEGNLLGELAAWKEIGVANLPGVISLAAGLLMWVTSLHPVRKTYFELFFYTHQLYII 307
Query: 134 FLVLFALHVGVAFFCSILPGVFLFMVDRYXXXXXXXXXXXXXXXXXXXCDAVELNFCKSP 193
F+V A HVG F +FLFM+DR+ C VEL F K
Sbjct: 308 FVVFLAFHVGDFIFSFSAGPIFLFMLDRFLRFWQCRAKVDIISASCRPCGTVELVFSKPA 367
Query: 194 HLTHSPMSTVFINVPCVSRLQWHPFTVTSSSSLEPDRLSVVVKRAGRWTEKLYETISSLP 253
L ++ +S +F+ V +S L+WHPF+V+SS +S+++K G WTEKL I+
Sbjct: 368 SLRYNALSFIFVQVRELSFLEWHPFSVSSSPMDGRYHMSILIKVLGSWTEKLRGIITDAQ 427
Query: 254 -------PSQPGHLDVSVEGPYSQATPASFLQYDSLVMISGGGGITPFISVIRELVHRSG 306
S+ G + VEGPY +P L Y++L++++GG GI+PF++++ +++HR
Sbjct: 428 EQGRNGSESETGRITACVEGPYGHESPYH-LMYENLILVAGGIGISPFLAILSDIIHRIE 486
Query: 307 TAAEAATPSLLLIAVFKTSADLAMLDLIVPASGGFSDISRLELRIEAFVTRXXXXXXXXX 366
++L++ K S +L++L + S +L L I+AFVT+
Sbjct: 487 EGKPCMPKNVLVLWSVKKSNELSLLSAVDAQFISSSVSDKLHLDIQAFVTQESQPPLEEG 546
Query: 367 XXXXXXXXXXLVQAVAVDAPIAPVLGHNGWSARRVVSSSFFIFLLLVGAVQRLYIYPVDG 426
+ G+N W+ +S+ F+L Q Y+ ++
Sbjct: 547 IVGDDQKATGMFVKNGTTMSGLVGTGNNFWAGMYFAASTLG-FVLAYALAQAYYVRRLN- 604
Query: 427 NSNRVYPWSARTLLNLLLLCVGIAVAASAAV-LWN--KRRRAEEAK 469
V+ W L+ +L + G+A+ V LW+ ++R+AE+ +
Sbjct: 605 ----VFAWWHLGLVFVLCMAAGVALPGGLVVLLWHLSEKRKAEDDR 646
>Os09g0438000 Similar to RbohAOsp (Fragment)
Length = 1007
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 52/235 (22%)
Query: 114 PRVRRQMFELFFYAHHLYALFLVLFALHVGVAFFCSILPGVFLFMVDRYXXXXX------ 167
P R F F+Y+HHL +G+ + I G FLF+V R+
Sbjct: 618 PFNRLAGFNAFWYSHHL-----------LGIVYALLIAHGYFLFLVRRWYLKTTWMYISV 666
Query: 168 ------------XXXXXXXXXXXXXXC----DAVELNFCKSPHLTHSPMSTVFINVPCVS 211
C + + + K + +F+ P +S
Sbjct: 667 PLMLYVGERMLRALRSNAYAVKILKVCLLPGNVLTITMSKPYGFRYRSGQYIFLQCPTIS 726
Query: 212 RLQWHPFTVTSSSSLEPDRLSVVVKRAGRWTEKLYE---------------TISSLPPSQ 256
+WHPF++TS+ D LSV ++ G WT++L + S L ++
Sbjct: 727 PFEWHPFSITSAPG--DDYLSVHIRTNGDWTQELKRIFVENYFSPHLNRRASFSELGATE 784
Query: 257 PGHL-DVSVEGPYSQATPASFLQYDSLVMISGGGGITPFISVIRELVHRSGTAAE 310
P L + V+GPY A F YD L+++ G G TPFIS++R+L++ A E
Sbjct: 785 PRSLPRLLVDGPYG-APAQDFRNYDVLLLVGLGIGATPFISILRDLLNNIKLAEE 838
>Os05g0528000 Similar to RbohAOsp (Fragment)
Length = 951
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 48/245 (19%)
Query: 87 KWTRTKVANVPGELALLSGLVMWVTALPRVRRQMFELFFYAHHLYALFLVLFALHVGVAF 146
+W R + +P L+G F F+Y+HHL+ + + +H +
Sbjct: 547 RWFRRSLVKLPKPFDKLTG---------------FNAFWYSHHLFIIVYISLVIHGEWLY 591
Query: 147 FCSI-----------LPGVFLFMVDRYXXXXXXXXXXXXXXXXXXX-CDAVELNFCKSPH 194
I +P V L++ +R + + L K P
Sbjct: 592 LIRIWYKRTTWMYLAVP-VCLYVGERTLRFFRSGSYSVRLLKVAIYPGNVLTLQMSKPPT 650
Query: 195 LTHSPMSTVFINVPCVSRLQWHPFTVTSSSSLEPDRLSVVVKRAGRWTEKLYETISSL-- 252
+ +F+ P VS +WHPF++TS+ D LS+ V++ G WT +L S+
Sbjct: 651 FRYKSGQYMFVQCPAVSPFEWHPFSITSAPG--DDYLSIHVRQLGDWTRELKRVFSAACE 708
Query: 253 PP--SQPGHLDVS-----------VEGPYSQATPA-SFLQYDSLVMISGGGGITPFISVI 298
PP + G L ++GPY +PA + +YD L+++ G G TPFIS++
Sbjct: 709 PPVGGKSGLLRADETTKKALPKLLIDGPY--GSPAQDYSKYDVLLLVGLGIGATPFISIL 766
Query: 299 RELVH 303
++L++
Sbjct: 767 KDLIN 771
>AK099714
Length = 393
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 36/235 (15%)
Query: 111 TALPRVRRQMFELFFYAHHLYALFLVLFALHVGVAFFCS-----------ILPGVFLFMV 159
T +P + F F++ HHL+ + L +H G + S + V L++
Sbjct: 12 TPIPSKKMTGFNAFWFTHHLFVIVYTLLFVH-GTCLYLSRKWYKKTTWMYLAVPVVLYVS 70
Query: 160 DRYXXXXXXXXXXXXXXXXXXXCDAVELNFCKSPHLTHSPMSTVFINVPCVSRLQWHPFT 219
+R + + L K P + +FI VS +WHPF+
Sbjct: 71 ERILRLFRSHDAVGIQKVAVYPGNVLALYMSKPPGFRYRSGQYIFIKCTAVSPYEWHPFS 130
Query: 220 VTSSSSLEPDRLSVVVKRAGRWTEKLYETISSL--PPSQ-----------PGHLDVS--- 263
+TS+ D LSV ++ G WT +L S PP++ G D
Sbjct: 131 ITSAPG--DDYLSVHIRTRGDWTSRLRTVFSEACRPPTEGESGLLRADLSKGITDEKARF 188
Query: 264 ----VEGPYSQATPASFLQYDSLVMISGGGGITPFISVIRE-LVHRSGTAAEAAT 313
V+GPY A + +YD L++I G G TP IS++++ L H G + T
Sbjct: 189 PKLLVDGPYG-APAQDYREYDVLLLIGLGIGATPLISIVKDVLNHIQGEGSVGTT 242
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,387,765
Number of extensions: 619402
Number of successful extensions: 2295
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2287
Number of HSP's successfully gapped: 5
Length of query: 525
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 420
Effective length of database: 11,553,331
Effective search space: 4852399020
Effective search space used: 4852399020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)