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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0578600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ferric reductase-like transmembrane component family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.34 (0.113) R2 : 0.539
β1 : 0.281 (0.78) R2dD : 9e-04 R2D : -0.00833
β2 : 1.91 (0.198) R2dC : 0.101 R2C : 0.167
β3 : 3.37 (0.419) R2dE : 0.171 R2E : 0.285
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.4 (3.08) R2dD*E : 0.123 R2D*E : 0.179
γ1 : -0.838 (0.245) R2dN8 : 0.0328 R2N8 : 0.0259
σ : 1.51
deviance : 1047.11
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_____
C
peak time of C : 0.271
E
wheather : temperature
threshold : 24.92
memory length : 1931
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1036.19 1.51 5.34 0.239 1.92 3.27 -1.74 12.7 -0.799 0.03 25.19 1956 6.14 --
1101.52 1.55 5.59 -2.56 2.05 4.87 -1.07 -- -1.04 23.6 25.68 3426 7.86 --
1047.11 1.51 5.34 0.281 1.91 3.37 -- 12.4 -0.838 0.271 24.92 1931 6.5 --
1079.14 1.53 5.64 -2.44 1.95 4.5 -- -- -1.31 0.522 25.15 1906 6.21 --
1230.28 1.63 5.43 -0.802 -- 4.39 -- 7.99 -1.34 -- 24.49 2116 8.08 --
1736.4 1.95 5.6 -1.49 2.57 -- -0.689 -- -1.12 0.185 -- -- -- --
1738.44 1.95 5.59 -1.46 2.57 -- -- -- -1.12 0.215 -- -- -- --
1243.47 1.64 5.68 -2.81 -- 5.09 -- -- -1.72 -- 24.6 2120 8.14 --
1245.95 1.64 5.57 -- 1.96 4.13 -- -- -1.07 0.381 25.38 1916 6.09 --
2153.39 2.17 5.54 -1.38 -- -- -- -- -1.08 -- -- -- -- --
1794.91 1.98 5.56 -- 2.55 -- -- -- -0.954 0.184 -- -- -- --
1438.43 1.77 5.58 -- -- 4.54 -- -- -1.25 -- 24.9 2089 7.35 --
2203.62 2.19 5.51 -- -- -- -- -- -0.925 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1048.58 humidity 50.0 14400 < th dose independent rect. 17 16
2 1054.96 humidity 50.0 14400 > th dose independent rect. 17 1
3 1055.05 humidity 50.0 14400 < th dose dependent rect. 17 16
4 1057.12 humidity 50.0 14400 < th dose independent rect. 16 18
5 1057.37 humidity 50.0 14400 < th dose dependent rect. 17 1
20 1060.00 humidity 50.0 14400 < th dose independent rect. 17 1
37 1061.98 humidity 50.0 14400 > th dose independent rect. 16 17
56 1064.35 humidity 50.0 14400 > th dose independent rect. 16 12
57 1064.59 humidity 50.0 14400 > th dose independent rect. 16 8
104 1082.10 radiation 10.0 1440 > th dose dependent rect. 16 1
105 1083.81 temperature 25.0 1440 > th dose dependent sin 10 NA
106 1084.88 temperature 25.0 4320 > th dose dependent rect. 17 8
114 1086.88 temperature 25.0 1440 > th dose dependent rect. 16 18
116 1087.32 temperature 30.0 1440 > th dose independent rect. 16 2
120 1087.68 temperature 25.0 1440 > th dose dependent rect. 16 14
122 1087.73 temperature 25.0 4320 > th dose dependent rect. 17 2
126 1087.95 temperature 30.0 1440 < th dose independent rect. 17 1
135 1088.92 temperature 25.0 4320 < th dose independent rect. 6 2
147 1090.01 precipitation 0.1 43200 < th dose independent rect. 20 1
148 1090.01 precipitation 0.1 43200 < th dose dependent rect. 20 1
151 1090.45 radiation 10.0 1440 > th dose dependent rect. 16 14
174 1091.81 temperature 25.0 4320 > th dose independent rect. 7 1
185 1092.72 precipitation 0.1 43200 > th dose independent rect. 20 1
198 1093.85 temperature 25.0 1440 > th dose dependent rect. 23 10
204 1094.56 temperature 25.0 1440 > th dose dependent rect. 22 12
208 1094.76 temperature 25.0 1440 > th dose dependent rect. 20 14
286 1102.46 radiation 20.0 1440 > th dose independent rect. 16 1
326 1106.13 wind 9.0 43200 > th dose independent rect. 20 10
330 1106.39 temperature 30.0 1440 < th dose independent rect. 16 8
337 1106.92 temperature 30.0 1440 < th dose independent rect. 16 5
354 1107.09 radiation 20.0 1440 < th dose independent rect. 16 3
360 1107.40 temperature 30.0 1440 < th dose independent rect. 16 15
367 1107.82 radiation 20.0 1440 < th dose independent rect. 16 1
368 1107.83 temperature 30.0 1440 > th dose independent rect. 16 22
370 1107.90 wind 9.0 43200 < th dose independent rect. 20 10
379 1108.17 temperature 30.0 1440 < th dose independent rect. 16 10
380 1108.19 temperature 30.0 1440 < th dose independent rect. 16 22
396 1109.32 temperature 30.0 1440 < th dose independent rect. 11 1
397 1109.33 radiation 20.0 1440 < th dose independent rect. 16 12
398 1109.41 radiation 20.0 1440 < th dose independent rect. 16 8
414 1110.47 temperature 30.0 1440 > th dose dependent rect. 12 3
425 1110.95 temperature 30.0 1440 > th dose independent rect. 11 3
427 1111.02 temperature 30.0 1440 > th dose dependent rect. 13 1
438 1112.00 temperature 30.0 1440 > th dose independent rect. 11 1
461 1113.10 temperature 25.0 1440 > th dose dependent no NA NA
467 1113.27 temperature 25.0 1440 > th dose dependent rect. 6 23
510 1114.54 temperature 25.0 1440 > th dose dependent rect. 22 23
527 1115.01 temperature 25.0 1440 > th dose dependent rect. 20 23
528 1115.03 temperature 30.0 1440 < th dose independent rect. 10 4
538 1115.27 precipitation 0.1 43200 > th dose dependent rect. 17 7
544 1115.45 radiation 20.0 4320 > th dose independent rect. 15 16
565 1115.80 temperature 30.0 14400 < th dose independent rect. 18 10
582 1116.30 temperature 30.0 14400 < th dose independent rect. 18 1
584 1116.52 temperature 30.0 14400 < th dose independent rect. 18 7
608 1117.25 precipitation 0.1 43200 > th dose dependent rect. 6 12
724 1120.63 temperature 30.0 1440 > th dose dependent sin 0 NA