BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0578400 Os04g0578400|AK060559
(309 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0578400 Similar to Beta-ring hydroxylase (Fragment) 492 e-139
Os03g0125100 Similar to Beta-ring hydroxylase (Fragment) 330 6e-91
Os10g0533500 Similar to Beta-ring hydroxylase (Fragment) 329 1e-90
>Os04g0578400 Similar to Beta-ring hydroxylase (Fragment)
Length = 309
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/309 (85%), Positives = 264/309 (85%)
Query: 1 MATGLSGGAMTSFAVKKPLLAAAVRRRSWPPPSGRALPFSPLTRTPRSRGLGTVTCFVPQ 60
MATGLSGGAMTSFAVKKPLLAAAVRRRSWPPPSGRALPFSPLTRTPRSRGLGTVTCFVPQ
Sbjct: 1 MATGLSGGAMTSFAVKKPLLAAAVRRRSWPPPSGRALPFSPLTRTPRSRGLGTVTCFVPQ 60
Query: 61 GTESQQXXXXXXXXXXXXXXXXXXXXXXXXXXRRIAERKARKLSERRTYLVAAVMSSLGF 120
GTESQQ RRIAERKARKLSERRTYLVAAVMSSLGF
Sbjct: 61 GTESQQAPAPSPPPTVPVPVPSLEEEAAAAAARRIAERKARKLSERRTYLVAAVMSSLGF 120
Query: 121 TSMAVAAVYYRFHWQLEGGDVPMTEMFGTFALSVGAAVGMEFWAQWAHRSLWHASLWHMH 180
TSMAVAAVYYRFHWQLEGGDVPMTEMFGTFALSVGAAVGMEFWAQWAHRSLWHASLWHMH
Sbjct: 121 TSMAVAAVYYRFHWQLEGGDVPMTEMFGTFALSVGAAVGMEFWAQWAHRSLWHASLWHMH 180
Query: 181 ESHHRAREGPFELNDVFAITNAVPAISLLAYGFFHRGIVPGLCFGAGLGITLFGMAYMFV 240
ESHHRAREGPFELNDVFAITNAVPAISLLAYGFFHRGIVPGLCFGAGLGITLFGMAYMFV
Sbjct: 181 ESHHRAREGPFELNDVFAITNAVPAISLLAYGFFHRGIVPGLCFGAGLGITLFGMAYMFV 240
Query: 241 HDGLVHRRFPVGPIANVPYFRRVAAAHKIHHTDKFEGVPYGLFXXXXXXXXXXXXXXXXX 300
HDGLVHRRFPVGPIANVPYFRRVAAAHKIHHTDKFEGVPYGLF
Sbjct: 241 HDGLVHRRFPVGPIANVPYFRRVAAAHKIHHTDKFEGVPYGLFLGPKELEEVGGLEELEK 300
Query: 301 XXARINRSL 309
ARINRSL
Sbjct: 301 ELARINRSL 309
>Os03g0125100 Similar to Beta-ring hydroxylase (Fragment)
Length = 319
Score = 330 bits (847), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 164/217 (75%), Positives = 174/217 (80%), Gaps = 35/217 (16%)
Query: 102 KLSERRTYLVAAVMSSLGFTSMAVAAVYYRFHWQLE------------------------ 137
K SERRTYLVAAVMSSLG TSMA AAVYYRF WQ+E
Sbjct: 70 KQSERRTYLVAAVMSSLGITSMAAAAVYYRFAWQMEVGNTPSPNSRSHLTITQFGNSFAA 129
Query: 138 -----------GGDVPMTEMFGTFALSVGAAVGMEFWAQWAHRSLWHASLWHMHESHHRA 186
G++P+TEMFGTFALSVGAAVGMEFWA+WAHR+LWHASLWHMHESHHR
Sbjct: 130 ALKFLRVLDQGSGEIPVTEMFGTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRP 189
Query: 187 REGPFELNDVFAITNAVPAISLLAYGFFHRGIVPGLCFGAGLGITLFGMAYMFVHDGLVH 246
R+GPFELNDVFAITNAVPA+SLLAYGFF RG+VPGLCFGAGLGITLFGMAYMFVHDGLVH
Sbjct: 190 RDGPFELNDVFAITNAVPAMSLLAYGFFTRGLVPGLCFGAGLGITLFGMAYMFVHDGLVH 249
Query: 247 RRFPVGPIANVPYFRRVAAAHKIHHTDKFEGVPYGLF 283
RRFPVGPIANVPYFRRVAAAH+IHH DKFEGVPYGLF
Sbjct: 250 RRFPVGPIANVPYFRRVAAAHQIHHMDKFEGVPYGLF 286
>Os10g0533500 Similar to Beta-ring hydroxylase (Fragment)
Length = 292
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 158/178 (88%), Positives = 166/178 (93%), Gaps = 2/178 (1%)
Query: 108 TYLVAAVMSSLGFTSMAVAAVYYRFHWQLE--GGDVPMTEMFGTFALSVGAAVGMEFWAQ 165
TYLVAAVMSSLGFTSMA AAVYYRF WQ+E GGDVP TEM GTFALSVGAAVGMEFWA+
Sbjct: 82 TYLVAAVMSSLGFTSMAAAAVYYRFAWQMEAGGGDVPATEMVGTFALSVGAAVGMEFWAR 141
Query: 166 WAHRSLWHASLWHMHESHHRAREGPFELNDVFAITNAVPAISLLAYGFFHRGIVPGLCFG 225
WAHR+LWHASLWHMHESHHR R+GPFELNDVFAI NA PAISLLAYG +RG++PGLCFG
Sbjct: 142 WAHRALWHASLWHMHESHHRPRDGPFELNDVFAIANAAPAISLLAYGLLNRGLLPGLCFG 201
Query: 226 AGLGITLFGMAYMFVHDGLVHRRFPVGPIANVPYFRRVAAAHKIHHTDKFEGVPYGLF 283
AGLGITLFGMAYMFVHDGLVHRRFPVGPI NVPYFRRVAAAH+IHHTDKFEGVPYGLF
Sbjct: 202 AGLGITLFGMAYMFVHDGLVHRRFPVGPIENVPYFRRVAAAHQIHHTDKFEGVPYGLF 259
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,893,824
Number of extensions: 411093
Number of successful extensions: 1498
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1496
Number of HSP's successfully gapped: 4
Length of query: 309
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 208
Effective length of database: 11,762,187
Effective search space: 2446534896
Effective search space used: 2446534896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)