BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0567700 Os04g0567700|AK064998
(157 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0567700 ORMDL family protein 283 5e-77
Os02g0673600 ORMDL family protein 253 5e-68
Os07g0452500 ORMDL family protein 244 1e-65
>Os04g0567700 ORMDL family protein
Length = 157
Score = 283 bits (723), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/157 (91%), Positives = 143/157 (91%)
Query: 1 MAKLYVQAVQPADLNKNTEWFMYPGVWTTYXXXXXXXXXXXXXXFGCTPGMAWTFVNLAH 60
MAKLYVQAVQPADLNKNTEWFMYPGVWTTY FGCTPGMAWTFVNLAH
Sbjct: 1 MAKLYVQAVQPADLNKNTEWFMYPGVWTTYILILFFSWLLVLSVFGCTPGMAWTFVNLAH 60
Query: 61 FAMTYHFFHWKKGTPFADDQGMYNRLTWWEQMDNGKQLTRNRKFLTVVPLVLYLIALHTT 120
FAMTYHFFHWKKGTPFADDQGMYNRLTWWEQMDNGKQLTRNRKFLTVVPLVLYLIALHTT
Sbjct: 61 FAMTYHFFHWKKGTPFADDQGMYNRLTWWEQMDNGKQLTRNRKFLTVVPLVLYLIALHTT 120
Query: 121 DYQHPMLFLNTIAVVVLVVAKLPNMHKVRIFGINAGN 157
DYQHPMLFLNTIAVVVLVVAKLPNMHKVRIFGINAGN
Sbjct: 121 DYQHPMLFLNTIAVVVLVVAKLPNMHKVRIFGINAGN 157
>Os02g0673600 ORMDL family protein
Length = 157
Score = 253 bits (645), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/157 (83%), Positives = 135/157 (85%)
Query: 1 MAKLYVQAVQPADLNKNTEWFMYPGVWTTYXXXXXXXXXXXXXXFGCTPGMAWTFVNLAH 60
MAKLYVQAV P DLN+NTEWFMYPGVWTTY FGCTPGMAWT VNL H
Sbjct: 1 MAKLYVQAVPPPDLNRNTEWFMYPGVWTTYICILFFSWLLVLSVFGCTPGMAWTVVNLFH 60
Query: 61 FAMTYHFFHWKKGTPFADDQGMYNRLTWWEQMDNGKQLTRNRKFLTVVPLVLYLIALHTT 120
FA+TYHFFHWKKGTPFADDQGMYN LTWWEQMDNGKQLTRNRKFL VVP+VLYLIA HTT
Sbjct: 61 FAITYHFFHWKKGTPFADDQGMYNTLTWWEQMDNGKQLTRNRKFLVVVPVVLYLIASHTT 120
Query: 121 DYQHPMLFLNTIAVVVLVVAKLPNMHKVRIFGINAGN 157
DYQHPMLFLNT+AV VLVVAKLPNMHKVRIFGINAGN
Sbjct: 121 DYQHPMLFLNTLAVAVLVVAKLPNMHKVRIFGINAGN 157
>Os07g0452500 ORMDL family protein
Length = 164
Score = 244 bits (624), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/152 (76%), Positives = 128/152 (84%), Gaps = 1/152 (0%)
Query: 5 YVQAVQPADLNKNTEWFMYPGVWTTYXXXXXXXXXXXXXXFGCTPGMAWTFVNLAHFAMT 64
YV+A P D+NKNTEWFMYPGVWTTY C+PG+AWT VNLAHFA+T
Sbjct: 11 YVEAAPPVDVNKNTEWFMYPGVWTTYILLLFFAWLLVLSVSACSPGIAWTVVNLAHFAIT 70
Query: 65 YHFFHWKKGTPFA-DDQGMYNRLTWWEQMDNGKQLTRNRKFLTVVPLVLYLIALHTTDYQ 123
YHFFHWKKGTPFA DDQG+YNRLTWWEQ+DNG+QLTRNRKFLTVVP+VLYLIA H TDY+
Sbjct: 71 YHFFHWKKGTPFAADDQGIYNRLTWWEQIDNGQQLTRNRKFLTVVPVVLYLIASHLTDYK 130
Query: 124 HPMLFLNTIAVVVLVVAKLPNMHKVRIFGINA 155
PMLFLNTIAV+VLVVAKLPNMHKVRIFGINA
Sbjct: 131 QPMLFLNTIAVLVLVVAKLPNMHKVRIFGINA 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,902,423
Number of extensions: 164461
Number of successful extensions: 305
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 152 (63.2 bits)