BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0556300 Os04g0556300|AK062772
(168 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0556300 Glutathione peroxidase 346 5e-96
Os02g0664000 Similar to Phospholipid hydroperoxide glutathi... 313 4e-86
Os03g0358100 Similar to Glutathione peroxidase 235 1e-62
Os11g0284900 Similar to Phospholipid hydroperoxide glutathi... 209 1e-54
Os06g0185900 Similar to Phospholipid hydroperoxide glutathi... 100 4e-22
>Os04g0556300 Glutathione peroxidase
Length = 168
Score = 346 bits (887), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MAAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYK 60
MAAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYK
Sbjct: 1 MAAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYK 60
Query: 61 VQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSN 120
VQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSN
Sbjct: 61 VQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSN 120
Query: 121 KGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS 168
KGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS
Sbjct: 121 KGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS 168
>Os02g0664000 Similar to Phospholipid hydroperoxide glutathione peroxidase,
chloroplast precursor (EC 1.11.1.12) (PHGPx)
Length = 238
Score = 313 bits (802), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 147/159 (92%), Positives = 157/159 (98%)
Query: 10 VHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKVQGFEILAF 69
VHDFTVKDASGKDV+LST+KGKVLLIVNVASQCGLTNSNYTELSQLYEKYK QGFEILAF
Sbjct: 80 VHDFTVKDASGKDVDLSTFKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKDQGFEILAF 139
Query: 70 PCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKGGLFGDSI 129
PCNQFGGQEPG+NEEIVQFACTRFKAEYPIFDKVDVNG+N AP+YK+LKS+KGGLFGD+I
Sbjct: 140 PCNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDNTAPIYKFLKSSKGGLFGDNI 199
Query: 130 KWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS 168
KWNFSKFLVDKEGRVV+RYAPTTSPLS+EKDIKKLLGSS
Sbjct: 200 KWNFSKFLVDKEGRVVERYAPTTSPLSMEKDIKKLLGSS 238
>Os03g0358100 Similar to Glutathione peroxidase
Length = 169
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 139/167 (83%), Gaps = 2/167 (1%)
Query: 1 MAAAPSA--TSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEK 58
M AA S TS+H+FTVKD +GK+V+L YKGKVL++VNVAS+CG T +NYT+L++LY+K
Sbjct: 1 MGAAESVPETSIHEFTVKDCNGKEVSLEMYKGKVLIVVNVASKCGFTETNYTQLTELYQK 60
Query: 59 YKVQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLK 118
++ + FEILAFPCNQF QEPGS+++I FACTRFKAEYP+F KV VNG +AAPLYK+LK
Sbjct: 61 HRDKDFEILAFPCNQFLRQEPGSDQQIKDFACTRFKAEYPVFQKVRVNGPDAAPLYKFLK 120
Query: 119 SNKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLL 165
++K GLFG IKWNF+KFL+DK G+V++RY+ TSPLS EKDI K L
Sbjct: 121 ASKPGLFGSRIKWNFTKFLIDKNGKVINRYSTATSPLSFEKDILKAL 167
>Os11g0284900 Similar to Phospholipid hydroperoxide glutathione peroxidase (EC
1.11.1.9)
Length = 144
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 109/126 (86%)
Query: 43 GLTNSNYTELSQLYEKYKVQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDK 102
GLTNSNY EL+ LYEKYK +G EILAFPCNQF GQEPGSNEEI Q CTRFKAE+PIFDK
Sbjct: 19 GLTNSNYKELNVLYEKYKEKGLEILAFPCNQFAGQEPGSNEEIEQTVCTRFKAEFPIFDK 78
Query: 103 VDVNGNNAAPLYKYLKSNKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIK 162
+DVNG AAPLYK+LKS KGG GD IKWNF+KFLV K+G+VV+RYAPTTSPL IE DI+
Sbjct: 79 IDVNGKEAAPLYKFLKSQKGGFLGDGIKWNFTKFLVGKDGKVVERYAPTTSPLKIENDIQ 138
Query: 163 KLLGSS 168
KLLG+S
Sbjct: 139 KLLGTS 144
>Os06g0185900 Similar to Phospholipid hydroperoxide glutathione peroxidase,
chloroplast precursor (EC 1.11.1.12) (PHGPx)
Length = 67
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 103 VDVNGNNAAPLYKYLKSNKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIK 162
VDVNG N AP+YK+LKS+ GG GD +KWNF KFLVDK G+VV+RY PTTSP IEKDI+
Sbjct: 3 VDVNGPNTAPIYKFLKSSAGGFLGDLVKWNFEKFLVDKTGKVVERYPPTTSPFQIEKDIQ 62
Query: 163 KLLGS 167
KLL +
Sbjct: 63 KLLAA 67
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,682,162
Number of extensions: 221355
Number of successful extensions: 317
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 5
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)