Os04g0556300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutathione peroxidase.
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Os04g0556300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutathione peroxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.85 | 0.322 | 14.5 | 0.0441 | 0.991 | -0.851 | 0.436 | -0.384 | 0.0901 | 8.94 | 21 | 1408 | -- | -- |
| 46.96 | 0.319 | 14.5 | 0.106 | 0.988 | -0.773 | 0.489 | -- | 0.122 | 8.93 | 21.3 | 1409 | -- | -- |
| 47.5 | 0.321 | 14.5 | 0.0549 | 0.99 | -0.851 | -- | -0.396 | 0.0889 | 8.94 | 20.9 | 1406 | -- | -- |
| 47.75 | 0.322 | 14.5 | 0.117 | 0.989 | -0.766 | -- | -- | 0.116 | 8.93 | 21.36 | 1409 | -- | -- |
| 94.01 | 0.452 | 14.5 | 0.253 | -- | -0.962 | -- | 0.412 | 0.245 | -- | 25.3 | 2086 | -- | -- |
| 63.43 | 0.373 | 14.6 | -0.216 | 0.997 | -- | 0.461 | -- | -0.096 | 9.03 | -- | -- | -- | -- |
| 64.16 | 0.375 | 14.6 | -0.2 | 0.995 | -- | -- | -- | -0.0956 | 9.04 | -- | -- | -- | -- |
| 77.42 | 0.41 | 14.5 | 0.0978 | -- | -0.975 | -- | -- | 0.257 | -- | 25.3 | 709 | -- | -- |
| 48.07 | 0.323 | 14.5 | -- | 0.988 | -0.727 | -- | -- | 0.0981 | 8.93 | 21.4 | 1409 | -- | -- |
| 121.14 | 0.514 | 14.6 | -0.201 | -- | -- | -- | -- | -0.0896 | -- | -- | -- | -- | -- |
| 65.21 | 0.378 | 14.6 | -- | 0.995 | -- | -- | -- | -0.0733 | 9.06 | -- | -- | -- | -- |
| 77.57 | 0.41 | 14.5 | -- | -- | -0.952 | -- | -- | 0.239 | -- | 25.3 | 709 | -- | -- |
| 122.21 | 0.516 | 14.6 | -- | -- | -- | -- | -- | -0.0673 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 3 | 45.58 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 4 | 45.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 9 | 45.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 10 | 45.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 12 | 45.60 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 13 | 45.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 22 | 45.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 25 | 45.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 28 | 45.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 57 | 45.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 60 | 45.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 226 | 46.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 236 | 46.05 | temperature | 25 | 1440 | < th | dose dependent | sin | 9 | NA |
| 392 | 46.30 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 489 | 46.48 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 498 | 46.49 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 624 | 46.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 944 | 47.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 987 | 47.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |