BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0556300 Os04g0556300|AK062772
(168 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11600.1 | chr4:7010021-7011330 REVERSE LENGTH=233 296 5e-81
AT4G31870.1 | chr4:15410205-15411617 FORWARD LENGTH=234 269 5e-73
AT2G25080.1 | chr2:10668134-10669828 FORWARD LENGTH=237 263 4e-71
AT2G43350.1 | chr2:18009195-18010533 REVERSE LENGTH=207 248 1e-66
AT2G31570.1 | chr2:13438211-13439775 REVERSE LENGTH=170 243 2e-65
AT3G63080.1 | chr3:23310161-23311200 FORWARD LENGTH=174 237 2e-63
AT1G63460.1 | chr1:23535118-23536326 FORWARD LENGTH=168 233 3e-62
AT2G48150.1 | chr2:19688109-19689099 REVERSE LENGTH=171 233 5e-62
>AT4G11600.1 | chr4:7010021-7011330 REVERSE LENGTH=233
Length = 232
Score = 296 bits (757), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 139/166 (83%), Positives = 153/166 (92%)
Query: 1 MAAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYK 60
MAA+ S++DFTVKDA G DV+LS YKGKVLLIVNVASQCGLTNSNYTEL+QLYEKYK
Sbjct: 64 MAASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYK 123
Query: 61 VQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSN 120
GFEILAFPCNQFG QEPG+NEEIVQFACTRFKAEYPIFDKVDVNG+ AAP+YK+LKS+
Sbjct: 124 GHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSS 183
Query: 121 KGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLG 166
KGGLFGD IKWNF+KFLVDK+G VVDR+APTTSPLSIEKD+KKLLG
Sbjct: 184 KGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLLG 229
>AT4G31870.1 | chr4:15410205-15411617 FORWARD LENGTH=234
Length = 233
Score = 269 bits (688), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 127/166 (76%), Positives = 142/166 (85%)
Query: 2 AAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKV 61
A A + SVHDFTVKD G DV+L +KGK LLIVNVAS+CGLT+SNY+ELSQLYEKYK
Sbjct: 68 ARAAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKN 127
Query: 62 QGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNK 121
QGFEILAFPCNQFGGQEPGSN EI QFACTRFKAE+PIFDKVDVNG + AP+YK+LKSN
Sbjct: 128 QGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNA 187
Query: 122 GGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGS 167
GG GD IKWNF KFLVDK+G+VV+RY PTTSP IEKDI+KLL +
Sbjct: 188 GGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIEKDIQKLLAA 233
>AT2G25080.1 | chr2:10668134-10669828 FORWARD LENGTH=237
Length = 236
Score = 263 bits (671), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 122/166 (73%), Positives = 141/166 (84%)
Query: 2 AAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKV 61
A A + +VHDFTVKD GKDV L+ +KGKV+LIVNVAS+CGLT+SNY+ELS LYEKYK
Sbjct: 71 ARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKT 130
Query: 62 QGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNK 121
QGFEILAFPCNQFG QEPGSN EI QFACTRFKAE+PIFDKVDVNG + AP+Y++LKSN
Sbjct: 131 QGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNA 190
Query: 122 GGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGS 167
GG G IKWNF KFL+DK+G+VV+RY PTTSP IEKDI+KLL +
Sbjct: 191 GGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLLAA 236
>AT2G43350.1 | chr2:18009195-18010533 REVERSE LENGTH=207
Length = 206
Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 115/163 (70%), Positives = 136/163 (83%)
Query: 6 SATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKVQGFE 65
S+TS+++ +VKD GKDV+LS + GKVLLIVNVAS+CGLT+ NY E++ LY KYK QGFE
Sbjct: 44 SSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFE 103
Query: 66 ILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKGGLF 125
ILAFPCNQFG QEPGSN EI + C FKAE+PIFDK++VNG N PLY +LK KGGLF
Sbjct: 104 ILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLF 163
Query: 126 GDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS 168
GD+IKWNF+KFLVD++G VVDRYAPTTSPL IEKDI KLL S+
Sbjct: 164 GDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEKDIVKLLASA 206
>AT2G31570.1 | chr2:13438211-13439775 REVERSE LENGTH=170
Length = 169
Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 115/166 (69%), Positives = 134/166 (80%)
Query: 3 AAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKVQ 62
A S S++DFTVKD G DV+L YKGK LL+VNVAS+CGLT++NY EL+ LYEKYK Q
Sbjct: 2 ADESPKSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQ 61
Query: 63 GFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKG 122
G EILAFPCNQF GQEPG+NEEI Q CTRFKAE+PIFDKVDVNG N APLYKYLK+ KG
Sbjct: 62 GLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKG 121
Query: 123 GLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS 168
GL D+IKWNF+KFLV +G+V+ RY+P TSPL EKDI+ LG +
Sbjct: 122 GLLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDIQTALGQA 167
>AT3G63080.1 | chr3:23310161-23311200 FORWARD LENGTH=174
Length = 173
Score = 237 bits (604), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 130/157 (82%)
Query: 10 VHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKVQGFEILAF 69
+H FTVKD+SGK+V+LS Y+GKVLL+VNVAS+CG T SNYT+L++LY KYK QGF +LAF
Sbjct: 14 IHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAF 73
Query: 70 PCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKGGLFGDSI 129
PCNQF QEPG++EE QFACTRFKAEYP+F KV VNG NAAP+YK+LKS K G I
Sbjct: 74 PCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRI 133
Query: 130 KWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLG 166
KWNF+KFLV K+G+V+DRY T SPLSI+KDI+K L
Sbjct: 134 KWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIEKALA 170
>AT1G63460.1 | chr1:23535118-23536326 FORWARD LENGTH=168
Length = 167
Score = 233 bits (595), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 105/166 (63%), Positives = 135/166 (81%)
Query: 3 AAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKVQ 62
A SV++ +++DA G ++ LS YK KVLLIVNVAS+CG+TNSNYTEL++LY +YK +
Sbjct: 2 ATKEPESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDK 61
Query: 63 GFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKG 122
G EILAFPCNQFG +EPG+N++I F CTRFK+E+PIF+K++VNG NA+PLYK+LK K
Sbjct: 62 GLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKW 121
Query: 123 GLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLLGSS 168
G+FGD I+WNF+KFLVDK G+ V RY PTTSPL++E DIK LL S
Sbjct: 122 GIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLLNIS 167
>AT2G48150.1 | chr2:19688109-19689099 REVERSE LENGTH=171
Length = 170
Score = 233 bits (593), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 132/164 (80%)
Query: 2 AAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKV 61
+A+ SVH FTVKD+SGKD+N+S Y+GKVLLIVNVAS+CG T +NYT+L++LY KYK
Sbjct: 4 SASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKD 63
Query: 62 QGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNK 121
Q FEILAFPCNQF QEPG+++E +FAC RFKAEYP+F KV VNG NAAP+YK+LK++K
Sbjct: 64 QDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASK 123
Query: 122 GGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKKLL 165
G IKWNF+KFLV K+G V+DRY +PLSIEKDIKK L
Sbjct: 124 PTFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEKDIKKAL 167
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,784,350
Number of extensions: 157609
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 8
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)