BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0541900 Os04g0541900|Os04g0541900
         (295 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0541900  Conserved hypothetical protein                      400   e-112
Os04g0606500  Conserved hypothetical protein                      131   5e-31
Os08g0230200  Conserved hypothetical protein                      129   2e-30

>Os04g0541900 Conserved hypothetical protein
          Length = 295

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/295 (70%), Positives = 209/295 (70%)

Query: 1   MLPGGEDGGKHRGXXXXXXXXXXXXSLNDLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MLPGGEDGGKHRG            SLNDLC                             
Sbjct: 1   MLPGGEDGGKHRGATADEEAAATAASLNDLCATAGDAGGLPALAPFPRAAVWAVAALLAV 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWNXXXXXXXXXXXXFVDGLPASSLRSA 120
                                            WN            FVDGLPASSLRSA
Sbjct: 61  GLGLGALVLAVVHSAALLVVAVLLSAAVVAFLLWNAAASASGRALRRFVDGLPASSLRSA 120

Query: 121 TDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVANPKNRCSKWKLTH 180
           TDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVANPKNRCSKWKLTH
Sbjct: 121 TDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVANPKNRCSKWKLTH 180

Query: 181 AERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLVTTSGNTELSSTLRCWLDERNI 240
           AERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLVTTSGNTELSSTLRCWLDERNI
Sbjct: 181 AERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLVTTSGNTELSSTLRCWLDERNI 240

Query: 241 PSEECQLIRLEEGVHQSPSLQNQNDKRLYLPSSILQGFHPSATRALEKTVKSREV 295
           PSEECQLIRLEEGVHQSPSLQNQNDKRLYLPSSILQGFHPSATRALEKTVKSREV
Sbjct: 241 PSEECQLIRLEEGVHQSPSLQNQNDKRLYLPSSILQGFHPSATRALEKTVKSREV 295



>Os04g0606500 Conserved hypothetical protein
          Length = 482

 Score =  131 bits (330), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 2/147 (1%)

Query: 108 FVDGLPASSLRSATDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVA 167
           FVD    + LR+A D Q +K+TG+V CG+  L SSY++V  CVYTST L +   W S+ A
Sbjct: 274 FVDRYSDADLRTAKDGQYIKVTGVVTCGNFPLESSYQRVPRCVYTSTTLHEYRGWDSKAA 333

Query: 168 NPKNRCSKWKLTHAERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLV-TTSGNTE 226
           N ++    W L   E+ A DFYI+D +SG RALVKAG+ +RV P +DE++++     N +
Sbjct: 334 NTQHHRFTWGLRSMEQHAVDFYISDFQSGLRALVKAGYGARVTPFVDESVIIDIDPDNKD 393

Query: 227 LSSTLRCWLDERNIPSEECQLIRLEEG 253
           +S   R WL ERN+ S++ +++RL+EG
Sbjct: 394 MSPEFRRWLRERNLSSDD-RIMRLKEG 419



>Os08g0230200 Conserved hypothetical protein
          Length = 482

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 96/147 (65%), Gaps = 2/147 (1%)

Query: 108 FVDGLPASSLRSATDDQLVKITGLVACGDISLISSYEKVENCVYTSTLLRKCGRWGSEVA 167
           FV   P + LR+A D Q VK+TG+V CG+  L SS+++V  CVYTST L +   W S+ A
Sbjct: 274 FVSRYPDADLRTAKDGQYVKVTGVVTCGNFPLESSFQRVPRCVYTSTCLYEYRGWDSKAA 333

Query: 168 NPKNRCSKWKLTHAERFAADFYITDAKSGKRALVKAGHDSRVVPLIDENLLV-TTSGNTE 226
           N ++R   W L   ER A DFYI+D +SG RALVK G+ +RV P +DE++++     N +
Sbjct: 334 NTEHRQFTWGLRSMERHAVDFYISDFQSGLRALVKTGYGARVTPYVDESVVIDINPDNKD 393

Query: 227 LSSTLRCWLDERNIPSEECQLIRLEEG 253
           +S     WL ERN+ S++ +++RL+EG
Sbjct: 394 MSPEFLRWLRERNLSSDD-RIMRLKEG 419



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,381,470
Number of extensions: 263182
Number of successful extensions: 584
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)