BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0538400 Os04g0538400|AK108230
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0538400 Similar to Nodulin 21 (N-21) 277 6e-75
Os08g0153300 177 9e-45
Os04g0686800 Protein of unknown function DUF125, transmembr... 109 2e-24
Os11g0161900 92 4e-19
Os02g0644200 Protein of unknown function DUF125, transmembr... 64 7e-11
>Os04g0538400 Similar to Nodulin 21 (N-21)
Length = 247
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 156/247 (63%), Positives = 156/247 (63%)
Query: 1 LHVQVAQXXXXXXXXXXXXXXXXXXLHVVXXXXXXXXXXXXXXXXXXXXXXXXXXVNYMA 60
LHVQVAQ LHVV VNYMA
Sbjct: 1 LHVQVAQGGGSSRRRRRRRRRGGSSLHVVEGGRGRRRPERSRRRRRRWRRGRWRGVNYMA 60
Query: 61 RAQWLRAAVLGANDGLVSVASLMIGIGAVNENNKAMLVSGLAGLVAGACSMAIGEFVSVY 120
RAQWLRAAVLGANDGLVSVASLMIGIGAVNENNKAMLVSGLAGLVAGACSMAIGEFVSVY
Sbjct: 61 RAQWLRAAVLGANDGLVSVASLMIGIGAVNENNKAMLVSGLAGLVAGACSMAIGEFVSVY 120
Query: 121 AQYDIEVTQXXXXXXXXXXXXXXXXXKLPSPTQXXXXXXXXXXIGGLLPLLTSGFIKPWG 180
AQYDIEVTQ KLPSPTQ IGGLLPLLTSGFIKPWG
Sbjct: 121 AQYDIEVTQIERDGDIDGADAAAAREKLPSPTQAAFASALAFAIGGLLPLLTSGFIKPWG 180
Query: 181 PRVGVVCXXXXXXXXXXXXXXXXXXXXNMVRSGTRVLLGGWLAMLITYAVLRLFATIFHG 240
PRVGVVC NMVRSGTRVLLGGWLAMLITYAVLRLFATIFHG
Sbjct: 181 PRVGVVCAASSVGLAGFGAAGGYLGGANMVRSGTRVLLGGWLAMLITYAVLRLFATIFHG 240
Query: 241 MNISSSA 247
MNISSSA
Sbjct: 241 MNISSSA 247
>Os08g0153300
Length = 249
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 114/188 (60%), Gaps = 5/188 (2%)
Query: 56 VNYMARAQWLRAAVLGANDGLVSVASLMIGIGAVNENNKAMLVSGLAGLVAGACSMAIGE 115
V+Y RAQWLRAAVLGANDGLVSVASLMIG+GAV+E+ +AMLVSG+AGLVAGACSMAIGE
Sbjct: 62 VDYSGRAQWLRAAVLGANDGLVSVASLMIGVGAVSESGRAMLVSGVAGLVAGACSMAIGE 121
Query: 116 FVSVYAQYDIEVTQXXXXXXX-----XXXXXXXXXXKLPSPTQXXXXXXXXXXIGGLLPL 170
FVSVYAQYDIEV +LPSP + +G LLPL
Sbjct: 122 FVSVYAQYDIEVAAARRRRRQRRRRCDGDGEEEGSGRLPSPFKAAAASALAFTVGALLPL 181
Query: 171 LTSGFIKPWGPRVGVVCXXXXXXXXXXXXXXXXXXXXNMVRSGTRVLLGGWLAMLITYAV 230
L GF++PW PRV VC + RS RVLLGGW AM Y V
Sbjct: 182 LAGGFVRPWAPRVAAVCAATSAALAGFGALGAALGGASPARSAARVLLGGWAAMAACYGV 241
Query: 231 LRLFATIF 238
LRLFA ++
Sbjct: 242 LRLFANLY 249
>Os04g0686800 Protein of unknown function DUF125, transmembrane family protein
Length = 199
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 89/166 (53%), Gaps = 4/166 (2%)
Query: 56 VNYMARAQWLRAAVLGANDGLVSVASLMIGIGAVNENNKAMLVSGLAGLVAGACSMAIGE 115
++ ARA WLRAAVLGANDGLVS ASLM+G+GAV +AM++SG AGL+AGACSMAIGE
Sbjct: 29 LDLAARANWLRAAVLGANDGLVSTASLMLGVGAVKAEARAMVISGFAGLLAGACSMAIGE 88
Query: 116 FVSVYAQYDIEVTQXXXXXXXXXXXXXXXXXKLPSPTQXXXXXXXXXXIGGLLPLLTSGF 175
FVSV +Q D+E+ Q Q +G ++PLL +GF
Sbjct: 89 FVSVCSQRDVELAQLERDGKRGGEEEKALPSP----AQAAAASAMAFSVGAVVPLLAAGF 144
Query: 176 IKPWGPRVGVVCXXXXXXXXXXXXXXXXXXXXNMVRSGTRVLLGGW 221
I + R+ VV + RS RV+LGGW
Sbjct: 145 IVNYRLRIAVVVAVASVALAAFGCVGAVLGRAAVARSSARVVLGGW 190
>Os11g0161900
Length = 207
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Query: 62 AQWLRAAVLGANDGLVSVASLMIGIGAVNENN-KAMLVSGLAGLVAGACSMAIGEFVSVY 120
+QWLRAAVLGA+DGLVS A+LM+GIGA + +A+L+SGLAGLVAGACSMAIGE+VSV+
Sbjct: 32 SQWLRAAVLGASDGLVSTAALMLGIGAARPADARAVLLSGLAGLVAGACSMAIGEYVSVH 91
Query: 121 AQYDIEVTQ 129
Q D+E+
Sbjct: 92 VQLDVELAD 100
>Os02g0644200 Protein of unknown function DUF125, transmembrane family protein
Length = 128
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 58/123 (47%)
Query: 112 AIGEFVSVYAQYDIEVTQXXXXXXXXXXXXXXXXXKLPSPTQXXXXXXXXXXIGGLLPLL 171
AIGEFVSVYAQ DI+ Q +LPSPT G LPLL
Sbjct: 1 AIGEFVSVYAQCDIQAAQIERARGGKDADGGEEEEELPSPTMAAVASALSFAAGAALPLL 60
Query: 172 TSGFIKPWGPRVGVVCXXXXXXXXXXXXXXXXXXXXNMVRSGTRVLLGGWLAMLITYAVL 231
GF++PW RV VC + RSG R+L+GGWLAM +TY VL
Sbjct: 61 AGGFVRPWAARVAAVCAASSLGLAGFGVASAYLGGAGVARSGVRMLVGGWLAMAVTYGVL 120
Query: 232 RLF 234
+LF
Sbjct: 121 KLF 123
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,466,026
Number of extensions: 111743
Number of successful extensions: 309
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 5
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)