Os04g0686800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF125, transmembrane family protein.
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Os04g0686800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF125, transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.99 | 0.838 | 4.01 | -3.1 | 1.48 | 1.41 | -1.84 | 10.6 | 0.14 | 11.1 | 0.9094 | 4326 | -- | -- |
| 340.69 | 0.86 | 3.67 | -0.813 | 1.78 | 1.99 | -1.82 | -- | 0.874 | 12.4 | 128.5 | 1843 | -- | -- |
| 325.43 | 0.84 | 4.01 | -3.14 | 1.53 | 1.57 | -- | 10.8 | 0.149 | 11.5 | 0.6977 | 11708 | -- | -- |
| 354.36 | 0.877 | 3.67 | -0.867 | 1.78 | 2.02 | -- | -- | 0.873 | 12.6 | 162.4 | 1866 | -- | -- |
| 439.76 | 0.982 | 3.79 | -1.13 | -- | -1.03 | -- | 1.94 | 0.491 | -- | 0.6977 | 11708 | -- | -- |
| 418.91 | 0.96 | 3.74 | -0.953 | 1.51 | -- | -1.78 | -- | 0.528 | 11.2 | -- | -- | -- | -- |
| 432.3 | 0.974 | 3.75 | -1.02 | 1.52 | -- | -- | -- | 0.523 | 11.3 | -- | -- | -- | -- |
| 434.16 | 0.97 | 3.69 | -0.962 | -- | 2.28 | -- | -- | 0.919 | -- | 150.8 | 2524 | -- | -- |
| 374.53 | 0.901 | 3.65 | -- | 1.81 | 2.1 | -- | -- | 0.985 | 12.6 | 163.8 | 1865 | -- | -- |
| 576.22 | 1.12 | 3.78 | -1.06 | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
| 459.93 | 1 | 3.72 | -- | 1.53 | -- | -- | -- | 0.637 | 11.4 | -- | -- | -- | -- |
| 458.2 | 0.997 | 3.67 | -- | -- | 2.12 | -- | -- | 0.994 | -- | 175.9 | 1171 | -- | -- |
| 606.01 | 1.15 | 3.76 | -- | -- | -- | -- | -- | 0.626 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 287.90 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 2 | 287.91 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 3 | 288.97 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 4 | 289.01 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 21 | 289.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 31 | 289.93 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 51 | 290.28 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 56 | 290.37 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 125 | 292.10 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 131 | 292.20 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 134 | 292.33 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 141 | 292.56 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 154 | 292.78 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 173 | 293.19 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 186 | 293.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 187 | 293.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 193 | 293.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 194 | 293.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 196 | 293.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 198 | 293.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 202 | 293.95 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 203 | 293.97 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 208 | 294.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 226 | 294.24 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 237 | 294.31 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 243 | 294.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 256 | 294.56 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 257 | 294.58 | temperature | 25.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 272 | 294.77 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 273 | 294.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 287 | 294.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 288 | 294.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 290 | 294.92 | temperature | 25.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 299 | 295.05 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 305 | 295.14 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 307 | 295.18 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 336 | 295.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 342 | 295.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 348 | 295.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 349 | 295.59 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 10 |
| 457 | 296.29 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 472 | 296.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 476 | 296.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 488 | 296.38 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 540 | 296.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 543 | 296.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 546 | 296.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 689 | 297.38 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 811 | 297.92 | temperature | 15.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 875 | 298.18 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 11 |
| 995 | 298.68 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |