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Os04g0538400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nodulin 21 (N-21).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.2 (0.0931) R2 : 0.313
β1 : -5.06 (0.494) R2dD : 0.369 R2D : -0.115
β2 : 1.27 (0.213) R2dC : 0.0537 R2C : 0.0353
β3 : -0.928 (0.355) R2dE : 0.0125 R2E : -0.0077
β4 : 6.45 (0.813) R2dD*C : 0.0962 R2D*C : 0.0458
β5 : 9.93 (1.4) R2dD*E : 0.182 R2D*E : -0.177
γ1 : -1.19 (0.21) R2dN8 : 0.0781 R2N8 : -0.0336
σ : 1.7
deviance : 1301.95
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_____
C
peak time of C : 11.7
E
wheather : radiation
threshold : 0.9406
memory length : 5769
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.05
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1301.95 1.7 8.2 -5.06 1.27 -0.928 6.45 9.93 -1.19 11.7 0.9406 5769 7.05 --
1427.11 1.76 8.14 -2.27 0.605 -1.77 6.27 -- -0.714 11 0.98 6041 7 --
1464.76 1.78 7.96 -4.98 1.35 -0.848 -- 10 -1.11 11.6 1.666 6937 7.13 --
1559.71 1.84 8.06 -2.69 0.465 -2.87 -- -- -0.706 12.5 0.003182 6020 7.14 --
1496.84 1.8 8.1 -4.29 -- 0.142 -- 10.2 -0.865 -- 0.8702 6967 6.68 --
1506.85 1.82 8 -2.25 1.37 -- 6.04 -- -0.504 11.8 -- -- -- --
1656.95 1.91 7.99 -2 1.4 -- -- -- -0.468 12.9 -- -- -- --
1564.74 1.84 8.09 -2.45 -- -3.25 -- -- -0.848 -- 0.3 6036 7.23 --
1703.74 1.92 8.16 -- 0.376 -2.51 -- -- -0.787 12.2 1.559 6016 7.59 --
1778.43 1.97 8.02 -2.05 -- -- -- -- -0.495 -- -- -- -- --
1762.43 1.96 7.94 -- 1.43 -- -- -- -0.245 13 -- -- -- --
1705.57 1.92 8.15 -- -- -2.67 -- -- -0.733 -- 1.631 6031 7.89 --
1889.55 2.03 7.97 -- -- -- -- -- -0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1239.79 wind 3.0 43200 < th dose dependent rect. 20 1
2 1247.45 wind 1.0 43200 < th dose dependent rect. 8 18
4 1251.97 precipitation 0.1 43200 > th dose dependent rect. 19 1
5 1252.28 wind 3.0 43200 < th dose independent rect. 18 3
10 1256.18 wind 3.0 43200 > th dose independent rect. 18 3
13 1257.68 wind 3.0 43200 < th dose independent rect. 17 5
14 1257.78 wind 1.0 43200 < th dose dependent rect. 10 3
16 1259.13 wind 3.0 43200 < th dose independent rect. 20 1
18 1259.87 wind 3.0 43200 > th dose independent rect. 17 5
24 1262.15 wind 3.0 43200 < th dose dependent rect. 18 4
25 1262.29 wind 1.0 43200 < th dose independent rect. 11 1
29 1263.25 wind 1.0 43200 > th dose independent rect. 23 3
32 1264.29 wind 3.0 43200 < th dose independent rect. 15 8
33 1264.35 wind 3.0 43200 > th dose independent rect. 15 8
37 1264.97 wind 1.0 43200 > th dose independent rect. 11 2
39 1265.68 wind 1.0 43200 < th dose independent rect. 8 20
40 1265.95 wind 1.0 43200 < th dose independent rect. 8 5
41 1265.98 wind 1.0 43200 > th dose independent rect. 8 5
42 1266.06 precipitation 0.1 43200 < th dose independent rect. 19 1
43 1266.06 precipitation 0.1 43200 < th dose dependent rect. 19 1
48 1267.46 precipitation 0.1 43200 > th dose independent rect. 19 1
51 1268.57 wind 3.0 43200 < th dose dependent rect. 19 7
54 1269.13 wind 3.0 43200 < th dose independent rect. 11 12
55 1269.48 wind 3.0 43200 > th dose independent rect. 11 11
56 1269.52 humidity 90.0 43200 < th dose dependent rect. 1 4
62 1270.23 wind 1.0 43200 < th dose independent rect. 23 3
68 1271.11 wind 1.0 43200 > th dose independent rect. 8 20
70 1271.21 wind 1.0 43200 < th dose independent rect. 10 18
73 1271.71 wind 1.0 43200 < th dose independent rect. 8 18
75 1271.77 wind 1.0 43200 < th dose dependent sin 17 NA
84 1272.67 wind 3.0 43200 > th dose independent sin 17 NA
87 1272.71 humidity 80.0 43200 > th dose independent rect. 18 14
90 1272.91 wind 3.0 43200 < th dose independent sin 17 NA
91 1272.92 humidity 80.0 43200 < th dose independent rect. 18 15
94 1273.07 wind 3.0 43200 < th dose dependent rect. 18 10
98 1273.18 wind 5.0 43200 < th dose dependent rect. 15 11
121 1274.53 wind 3.0 43200 > th dose independent rect. 12 16
126 1274.63 wind 3.0 43200 > th dose independent rect. 14 14
151 1275.43 wind 5.0 43200 < th dose dependent rect. 11 15
152 1275.44 wind 3.0 43200 < th dose independent rect. 12 16
155 1275.67 wind 5.0 43200 < th dose dependent rect. 15 7
169 1276.00 wind 3.0 43200 > th dose independent rect. 15 12
170 1276.06 wind 3.0 43200 < th dose independent rect. 14 14
178 1276.33 humidity 80.0 43200 < th dose independent sin 10 NA
191 1276.78 wind 3.0 43200 < th dose independent rect. 15 12
202 1277.04 wind 5.0 43200 < th dose dependent sin 16 NA
207 1277.15 wind 3.0 43200 < th dose dependent sin 14 NA
236 1277.74 humidity 80.0 43200 > th dose independent sin 10 NA
237 1277.76 wind 1.0 43200 > th dose independent rect. 8 18
302 1279.67 wind 9.0 43200 < th dose dependent rect. 15 2
305 1279.76 wind 1.0 43200 > th dose dependent rect. 15 2
321 1280.00 temperature 30.0 43200 > th dose dependent rect. 12 1
339 1280.40 temperature 30.0 43200 > th dose dependent rect. 8 3
353 1280.41 humidity 80.0 43200 < th dose independent rect. 23 12
395 1280.78 wind 1.0 43200 < th dose independent rect. 19 7
409 1281.07 wind 3.0 43200 < th dose independent rect. 6 15
413 1281.19 humidity 80.0 43200 > th dose independent rect. 3 6
449 1281.93 temperature 30.0 43200 > th dose independent rect. 10 1
485 1282.15 humidity 80.0 43200 < th dose independent rect. 22 14
487 1282.17 temperature 30.0 43200 > th dose dependent sin 8 NA
488 1282.23 temperature 30.0 43200 > th dose independent rect. 8 3
511 1282.37 humidity 80.0 43200 < th dose independent rect. 1 9
530 1282.85 temperature 30.0 43200 < th dose independent rect. 24 11
532 1282.85 temperature 30.0 43200 < th dose independent rect. 21 14
533 1282.86 temperature 30.0 43200 < th dose independent rect. 10 1
534 1282.86 temperature 30.0 43200 < th dose independent rect. 5 6
537 1282.88 temperature 30.0 43200 < th dose independent rect. 8 3
545 1282.93 humidity 80.0 43200 > th dose independent rect. 24 10
551 1282.96 wind 3.0 43200 > th dose independent rect. 6 15
553 1283.05 wind 1.0 43200 < th dose independent rect. 21 5
671 1285.23 wind 1.0 43200 > th dose independent rect. 24 1
747 1286.35 wind 3.0 43200 > th dose independent rect. 11 6
754 1286.48 radiation 1.0 43200 < th dose independent rect. 12 18
772 1286.75 wind 1.0 43200 > th dose dependent rect. 15 6
773 1286.76 atmosphere 1010.0 14400 < th dose independent rect. 17 1
797 1287.12 radiation 1.0 43200 < th dose independent rect. 15 15
803 1287.25 radiation 1.0 43200 < th dose independent rect. 17 1
836 1287.98 radiation 1.0 43200 > th dose independent rect. 12 18
867 1288.30 radiation 1.0 43200 > th dose independent rect. 16 2
872 1288.34 wind 5.0 43200 < th dose dependent rect. 11 6
885 1288.59 atmosphere 1010.0 14400 > th dose independent rect. 17 2
895 1288.68 atmosphere 1010.0 14400 > th dose independent rect. 12 1
902 1288.82 radiation 10.0 43200 > th dose independent rect. 10 1
912 1288.92 wind 3.0 43200 > th dose independent rect. 16 1
940 1289.27 radiation 1.0 43200 > th dose independent rect. 13 5
980 1289.66 radiation 1.0 43200 < th dose independent rect. 13 5
984 1289.70 wind 3.0 43200 < th dose independent rect. 11 6