Os02g0644200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF125, transmembrane family protein.
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Os02g0644200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF125, transmembrane family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 175.25 | 0.622 | 4.28 | 3.4 | 0.131 | 119 | 0.0221 | 246 | 0.118 | 22 | 14.92 | 4245 | -- | -- |
| 178.68 | 0.627 | 2.76 | -0.0724 | 0.127 | 1.29 | 0.0407 | -- | 0.0586 | 21.9 | 14.92 | 4245 | -- | -- |
| 175.23 | 0.617 | 4.28 | 3.39 | 0.132 | 119 | -- | 246 | 0.114 | 22 | 14.92 | 4227 | -- | -- |
| 178.63 | 0.622 | 2.74 | 0.0733 | 0.146 | 0.928 | -- | -- | 0.105 | 21.2 | 15.2 | 2938 | -- | -- |
| 176.28 | 0.618 | 4.28 | 3.41 | -- | 120 | -- | 248 | 0.111 | -- | 14.92 | 4237 | -- | -- |
| 181.82 | 0.632 | 2.76 | -0.127 | 0.146 | -- | -0.102 | -- | 0.0454 | 22.1 | -- | -- | -- | -- |
| 181.87 | 0.632 | 2.76 | -0.123 | 0.146 | -- | -- | -- | 0.0456 | 22.1 | -- | -- | -- | -- |
| 179.64 | 0.627 | 2.75 | -0.0707 | -- | 1.34 | -- | -- | 0.059 | -- | 14.92 | 4237 | -- | -- |
| 178.21 | 0.622 | 2.75 | -- | 0.152 | 0.722 | -- | -- | 0.0892 | 22.5 | 16.2 | 2629 | -- | -- |
| 183.15 | 0.632 | 2.76 | -0.121 | -- | -- | -- | -- | 0.0458 | -- | -- | -- | -- | -- |
| 182.27 | 0.632 | 2.76 | -- | 0.145 | -- | -- | -- | 0.0594 | 22.1 | -- | -- | -- | -- |
| 179.63 | 0.624 | 2.75 | -- | -- | 0.712 | -- | -- | 0.0864 | -- | 16.17 | 2659 | -- | -- |
| 183.54 | 0.632 | 2.75 | -- | -- | -- | -- | -- | 0.0593 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.47 | radiation | 20 | 10 | < th | dose independent | rect. | 14 | 12 |
| 4 | 164.06 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 11 | 165.11 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 28 | 165.11 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |
| 45 | 165.12 | radiation | 20 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 76 | 165.22 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 1 |
| 188 | 166.23 | radiation | 30 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 223 | 166.60 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 1 |
| 225 | 166.97 | wind | 1 | 10 | < th | dose dependent | rect. | 24 | 3 |
| 230 | 167.25 | humidity | 60 | 10 | > th | dose independent | rect. | 14 | 12 |
| 276 | 168.39 | wind | 3 | 10 | < th | dose independent | rect. | 16 | 1 |
| 278 | 168.41 | wind | 1 | 90 | < th | dose dependent | rect. | 14 | 4 |
| 302 | 168.75 | humidity | 60 | 30 | < th | dose independent | rect. | 15 | 1 |
| 328 | 169.23 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 3 |
| 342 | 169.66 | wind | 5 | 10 | < th | dose dependent | rect. | 15 | 2 |
| 355 | 169.91 | wind | 5 | 90 | < th | dose dependent | rect. | 15 | 1 |
| 361 | 169.97 | humidity | 70 | 30 | < th | dose dependent | rect. | 15 | 1 |
| 413 | 170.43 | wind | 1 | 10 | < th | dose independent | rect. | 24 | 2 |
| 427 | 170.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 457 | 171.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 461 | 171.54 | temperature | 15 | 720 | > th | dose independent | rect. | 14 | 1 |
| 463 | 171.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 3 |
| 473 | 171.68 | temperature | 15 | 30 | > th | dose independent | rect. | 14 | 12 |
| 491 | 171.96 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 1 | 1 |
| 504 | 172.19 | temperature | 15 | 10 | > th | dose independent | rect. | 16 | 10 |
| 527 | 172.47 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 532 | 172.51 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 567 | 172.72 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 613 | 172.96 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 650 | 173.08 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 685 | 173.17 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 687 | 173.19 | temperature | 15 | 720 | > th | dose independent | rect. | 14 | 3 |
| 694 | 173.24 | radiation | 20 | 10 | < th | dose independent | sin | 14 | NA |
| 695 | 173.24 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 698 | 173.26 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 706 | 173.27 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 763 | 173.36 | temperature | 25 | 30 | < th | dose independent | rect. | 15 | 11 |
| 767 | 173.37 | radiation | 10 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 796 | 173.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 802 | 173.60 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 810 | 173.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 811 | 173.62 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 817 | 173.69 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 868 | 173.87 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 869 | 173.87 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 3 |
| 873 | 173.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 908 | 173.96 | humidity | 80 | 30 | < th | dose independent | rect. | 1 | 1 |
| 912 | 173.96 | humidity | 80 | 30 | < th | dose dependent | rect. | 1 | 1 |
| 998 | 174.04 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 1 |