BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0527400 Os04g0527400|AK107295
         (413 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0527400  Conserved hypothetical protein                      719   0.0  
Os02g0828100  Conserved hypothetical protein                      385   e-107
Os11g0514800  Hypothetical protein                                250   1e-66

>Os04g0527400 Conserved hypothetical protein
          Length = 413

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/413 (86%), Positives = 359/413 (86%)

Query: 1   MGCGLSREKDAXXXXXXXXXXXXXXXXFLPGLRVPRSVDFSQALAGRLDEXXXXXXXXXX 60
           MGCGLSREKDA                FLPGLRVPRSVDFSQALAGRLDE          
Sbjct: 1   MGCGLSREKDAGGGPRRRPGSVGDVVVFLPGLRVPRSVDFSQALAGRLDEASSRLSSLRA 60

Query: 61  XVVDMAMQESXXXXXXXXXXXXXHGSSTANLLQALEDYLPVLLGLVKEGSELRHGVHFVW 120
            VVDMAMQES             HGSSTANLLQALEDYLPVLLGLVKEGSELRHGVHFVW
Sbjct: 61  RVVDMAMQESAAALKPKRRAAARHGSSTANLLQALEDYLPVLLGLVKEGSELRHGVHFVW 120

Query: 121 TNQEDNAEETAMADAWYEVLSVLHLMAMVCLLQANSLLLPRSYGDGYAPRVSEESRRATV 180
           TNQEDNAEETAMADAWYEVLSVLHLMAMVCLLQANSLLLPRSYGDGYAPRVSEESRRATV
Sbjct: 121 TNQEDNAEETAMADAWYEVLSVLHLMAMVCLLQANSLLLPRSYGDGYAPRVSEESRRATV 180

Query: 181 DVFLKASGYLDCAIRQVLPQISSELRRQLPVDLAEGNLKALSLQALGQGVDMQLGLAIDS 240
           DVFLKASGYLDCAIRQVLPQISSELRRQLPVDLAEGNLKALSLQALGQGVDMQLGLAIDS
Sbjct: 181 DVFLKASGYLDCAIRQVLPQISSELRRQLPVDLAEGNLKALSLQALGQGVDMQLGLAIDS 240

Query: 241 PKATLAVKRRLACEMVKYWHQIQESIPEIPVSDGWGKKHLLFVKWKYVEAKAAAYYFHGL 300
           PKATLAVKRRLACEMVKYWHQIQESIPEIPVSDGWGKKHLLFVKWKYVEAKAAAYYFHGL
Sbjct: 241 PKATLAVKRRLACEMVKYWHQIQESIPEIPVSDGWGKKHLLFVKWKYVEAKAAAYYFHGL 300

Query: 301 ILDEGNTEKSHGMAVAALQASEEFLKESKRASEAFHATPPTSRSPTPFGTAKYMLDKIPK 360
           ILDEGNTEKSHGMAVAALQASEEFLKESKRASEAFHATPPTSRSPTPFGTAKYMLDKIPK
Sbjct: 301 ILDEGNTEKSHGMAVAALQASEEFLKESKRASEAFHATPPTSRSPTPFGTAKYMLDKIPK 360

Query: 361 DASSKVKINQDLYTQERVIGTPPPLPDFALAXXXXXXXXXXXXXXWNKEDSRQ 413
           DASSKVKINQDLYTQERVIGTPPPLPDFALA              WNKEDSRQ
Sbjct: 361 DASSKVKINQDLYTQERVIGTPPPLPDFALALKPDDYDLPPLDPLWNKEDSRQ 413



>Os02g0828100 Conserved hypothetical protein
          Length = 355

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/330 (60%), Positives = 240/330 (72%), Gaps = 11/330 (3%)

Query: 28  FLPGLRVPRSVD------FSQALAGRLDEXXXXXXXXXXXVVDMAMQESXXXXXXXXXXX 81
           F+PGLRVP S D          L  RL E           ++ MA  E+           
Sbjct: 27  FVPGLRVPESSDELPLQPLGDGLPRRLTERLAALRNR---IIVMAAHEALYMTKPTWRIT 83

Query: 82  XXH--GSSTANLLQALEDYLPVLLGLVKEGSELRHGVHFVWTNQEDNAEETAMADAWYEV 139
                GS +A+LLQALEDYLP LLGLVK+GSEL   V F W NQED+AE+T+M  AWYEV
Sbjct: 84  ITQHGGSKSADLLQALEDYLPTLLGLVKDGSELEDKVQFAWMNQEDDAEDTSMPSAWYEV 143

Query: 140 LSVLHLMAMVCLLQANSLLLPRSYGDGYAPRVSEESRRATVDVFLKASGYLDCAIRQVLP 199
           LSVLHLMA++ L QANSLL+P++  +GY  +VSEE++RA+V++FLKA+GYL+CAI+ VLP
Sbjct: 144 LSVLHLMALLRLSQANSLLVPKTSIEGYHAKVSEENKRASVEIFLKAAGYLECAIQHVLP 203

Query: 200 QISSELRRQLPVDLAEGNLKALSLQALGQGVDMQLGLAIDSPKATLAVKRRLACEMVKYW 259
           +IS E R+ LPVDLAEG LKA+ +QALGQ +D+QLGLAIDSPKATLAVKRRLACEMVK W
Sbjct: 204 KISPEKRKGLPVDLAEGILKAICMQALGQAIDVQLGLAIDSPKATLAVKRRLACEMVKCW 263

Query: 260 HQIQESIPEIPVSDGWGKKHLLFVKWKYVEAKAAAYYFHGLILDEGNTEKSHGMAVAALQ 319
            Q  ESI ++P+ DGW +KH LFV WK++EAKAAAYY+HGLILDEGN+EKSH  AVAALQ
Sbjct: 264 QQAHESISDLPLLDGWAEKHRLFVTWKHIEAKAAAYYYHGLILDEGNSEKSHRTAVAALQ 323

Query: 320 ASEEFLKESKRASEAFHATPPTSRSPTPFG 349
           ++EE LKESK A EAFHA  P SR     G
Sbjct: 324 SAEELLKESKAACEAFHAASPVSRQARRCG 353



>Os11g0514800 Hypothetical protein
          Length = 424

 Score =  250 bits (639), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 223/387 (57%), Gaps = 13/387 (3%)

Query: 28  FLPGLRVPRSVDFSQALAGRLDEXXXXXXXXXXXVVDMAMQESXXXXXXXXXXXXXHGSS 87
           F+P +R+P   D +  L G + +           +VD   +                 S 
Sbjct: 30  FVPTIRIPVDSDVAHPLRGLVSKE----------LVDRLSKFRDRVVALSEDIYCADVSD 79

Query: 88  TANLLQALEDYLPVLLGLVKEGSELRHGVHFVWTNQEDNAEETAMADAWYEVLSVLHLMA 147
            + L  ALE+YLPV+LGL  + S L   V F W   +D+ EE  ++ AWYEVLSV+H+MA
Sbjct: 80  VSELQHALEEYLPVVLGLTMKESRLESSVEFRWRTLDDD-EECCLSSAWYEVLSVIHMMA 138

Query: 148 MVCLLQANSLLLPRSYGDGYAPRVSEESRRATVDVFLKASGYLDCAIRQVLPQISSELRR 207
           M+ L +AN +L+P++   G   +VSE++++  VD  L+ASG LD  + ++L Q+ +++++
Sbjct: 139 MLALFEANLILIPKNGQVGGERKVSEDAKKDVVDSLLRASGCLDYCVHRILVQMPAQVKK 198

Query: 208 QLPVDLAEGNLKALSLQALGQGVDMQLGLAIDSPKATLAVKRRLACEMVKYWHQIQESIP 267
             P    EG L+A+S+QAL Q V++QLGLA +  KATL+VKRRLACE+V Y+ Q    + 
Sbjct: 199 SFPSYFQEGMLEAISIQALAQCVEIQLGLASECEKATLSVKRRLACELVSYFSQAHYCLS 258

Query: 268 EIPVSDGWGKKHLLFVKWKYVEAKAAAYYFHGLILDEGNTEKSHGMAVAALQASEEFLKE 327
               SD +GKK LLF+KWK +EAKA AYY+HGL+LD+GN   SH  AV  L A+++ + +
Sbjct: 259 GCDTSDSFGKKLLLFLKWKCMEAKAVAYYYHGLVLDKGNEASSHISAVCCLSAADDLVAD 318

Query: 328 SKRASEAFHATPPTSRSPTPFGTAKYMLDKIPKDASSKVKINQDLYTQER--VIGTPPPL 385
           SKRA  +F    P +R P P+G  + M  KIP  A  + ++   L+ Q+    + + P L
Sbjct: 319 SKRACLSFCLANPITRVPPPWGIMRNMHKKIPDSACKRFQMYGYLFEQDNNSALQSLPDL 378

Query: 386 PDFALAXXXXXXXXXXXXXXWNKEDSR 412
           P+FAL+              W+  DS+
Sbjct: 379 PEFALSLRPEGYELPSTDSIWDNVDSQ 405



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,274,410
Number of extensions: 481788
Number of successful extensions: 1226
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 3
Length of query: 413
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 310
Effective length of database: 11,657,759
Effective search space: 3613905290
Effective search space used: 3613905290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)