Os04g0527400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0527400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.64 | 0.471 | 9.69 | -1.32 | 2.07 | -1.62 | -0.552 | 1.09 | -0.492 | 12.4 | 14.22 | 66 | -- | -- |
| 102.56 | 0.472 | 9.68 | -1.3 | 2.36 | -1.41 | -1.6 | -- | -0.487 | 12.3 | 15.67 | 72 | -- | -- |
| 100.81 | 0.468 | 9.69 | -1.34 | 2.08 | -1.61 | -- | 1.54 | -0.492 | 12.4 | 14.06 | 63 | -- | -- |
| 113.46 | 0.496 | 9.7 | -1.34 | 2.1 | -1.57 | -- | -- | -0.485 | 12.4 | 12.9 | 66 | -- | -- |
| 141.02 | 0.553 | 9.75 | -1.31 | -- | -3.09 | -- | 1.46 | -0.562 | -- | 7.176 | 92 | -- | -- |
| 142.95 | 0.561 | 9.64 | -1.27 | 3.8 | -- | -1.55 | -- | -0.372 | 12.4 | -- | -- | -- | -- |
| 153.28 | 0.58 | 9.65 | -1.33 | 3.81 | -- | -- | -- | -0.379 | 12.4 | -- | -- | -- | -- |
| 155.15 | 0.58 | 9.75 | -1.35 | -- | -3.08 | -- | -- | -0.577 | -- | 7.126 | 92 | -- | -- |
| 159.9 | 0.589 | 9.68 | -- | 1.97 | -1.65 | -- | -- | -0.368 | 12.4 | 10.49 | 66 | -- | -- |
| 1065.21 | 1.53 | 9.72 | -1.46 | -- | -- | -- | -- | -0.441 | -- | -- | -- | -- | -- |
| 200.02 | 0.662 | 9.61 | -- | 3.83 | -- | -- | -- | -0.231 | 12.4 | -- | -- | -- | -- |
| 201.71 | 0.661 | 9.72 | -- | -- | -3.11 | -- | -- | -0.429 | -- | 8.642 | 85 | -- | -- |
| 1121.54 | 1.56 | 9.68 | -- | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.77 | radiation | 1 | 90 | > th | dose independent | sin | 0 | NA |
| 2 | 99.44 | radiation | 1 | 90 | < th | dose independent | sin | 0 | NA |
| 5 | 101.15 | radiation | 1 | 90 | < th | dose dependent | sin | 0 | NA |
| 7 | 102.73 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 18 |
| 14 | 104.15 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 15 | 104.17 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 16 | 104.25 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 19 | 104.55 | radiation | 20 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 29 | 104.94 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 31 | 105.03 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 33 | 105.10 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 36 | 105.18 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 46 | 105.69 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 15 |
| 67 | 106.10 | radiation | 1 | 90 | < th | dose independent | rect. | 3 | 17 |
| 92 | 107.21 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 95 | 107.24 | radiation | 10 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 127 | 107.91 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 134 | 107.99 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 138 | 108.03 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 143 | 108.08 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 18 |
| 147 | 108.14 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 161 | 108.44 | radiation | 20 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 165 | 108.56 | radiation | 10 | 30 | > th | dose independent | rect. | 11 | 23 |
| 178 | 108.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 191 | 109.00 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 225 | 109.40 | radiation | 20 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 232 | 109.49 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 294 | 110.10 | humidity | 50 | 10 | > th | dose dependent | sin | 2 | NA |
| 303 | 110.16 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 12 |
| 353 | 110.59 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 396 | 111.00 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 402 | 111.07 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 417 | 111.20 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 431 | 111.30 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 473 | 111.59 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 10 |
| 492 | 111.69 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 8 |
| 515 | 111.84 | humidity | 50 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 610 | 112.37 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 709 | 112.53 | radiation | 30 | 30 | < th | dose independent | rect. | 3 | 18 |
| 728 | 112.68 | humidity | 60 | 270 | > th | dose independent | rect. | 24 | 11 |
| 795 | 113.02 | humidity | 90 | 10 | < th | dose dependent | sin | 1 | NA |
| 800 | 113.04 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 11 |
| 823 | 113.13 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 10 |
| 855 | 113.25 | radiation | 40 | 30 | < th | dose dependent | rect. | 3 | 11 |
| 862 | 113.27 | radiation | 1 | 10 | < th | dose dependent | rect. | 15 | 6 |
| 977 | 113.63 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 23 |