BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0515400 Os04g0515400|Os04g0515400
         (137 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0515400  Conserved hypothetical protein                      224   1e-59
Os02g0479300  MazG nucleotide pyrophosphohydrolase domain co...   164   2e-41
Os04g0346800  EAR repeat containing protein                        83   8e-17

>Os04g0515400 Conserved hypothetical protein
          Length = 137

 Score =  224 bits (571), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 28  SDVSLKELSKKLDDFAKERDWEMYHAPRNLLLAMIAEVGELSELFMWKGEVAKGLPGWKE 87
           SDVSLKELSKKLDDFAKERDWEMYHAPRNLLLAMIAEVGELSELFMWKGEVAKGLPGWKE
Sbjct: 28  SDVSLKELSKKLDDFAKERDWEMYHAPRNLLLAMIAEVGELSELFMWKGEVAKGLPGWKE 87

Query: 88  SEKEHLGEELSDVLLYLIRLSDMCGVDLGDAATRKIVKNAVKYPAPSKST 137
           SEKEHLGEELSDVLLYLIRLSDMCGVDLGDAATRKIVKNAVKYPAPSKST
Sbjct: 88  SEKEHLGEELSDVLLYLIRLSDMCGVDLGDAATRKIVKNAVKYPAPSKST 137



>Os02g0479300 MazG nucleotide pyrophosphohydrolase domain containing protein
          Length = 172

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 90/105 (85%)

Query: 28  SDVSLKELSKKLDDFAKERDWEMYHAPRNLLLAMIAEVGELSELFMWKGEVAKGLPGWKE 87
           + V L+EL +++ DFA+ERDWE +H+PRNLLLA++ EVGELSE+F WKGEV KGLPGW E
Sbjct: 20  ATVGLEELRRRMADFARERDWEQFHSPRNLLLALVGEVGELSEIFQWKGEVPKGLPGWDE 79

Query: 88  SEKEHLGEELSDVLLYLIRLSDMCGVDLGDAATRKIVKNAVKYPA 132
           +EK HLGEEL+DVLLYL+RLSDMCGVDLG AA RK+  NA KYPA
Sbjct: 80  AEKVHLGEELADVLLYLVRLSDMCGVDLGSAALRKLEINARKYPA 124



>Os04g0346800 EAR repeat containing protein
          Length = 86

 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 46/53 (86%)

Query: 29 DVSLKELSKKLDDFAKERDWEMYHAPRNLLLAMIAEVGELSELFMWKGEVAKG 81
          +V+L+ L +K+ +FA+ERDWE +H+PRNLLLA++ EVGELSE+F WKGEV KG
Sbjct: 23 EVTLETLRRKMSEFARERDWEQFHSPRNLLLALVGEVGELSEVFQWKGEVPKG 75



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,525,388
Number of extensions: 123186
Number of successful extensions: 217
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 3
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 150 (62.4 bits)