Os04g0346800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EAR repeat containing protein.
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Os04g0346800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EAR repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.43 | 0.386 | 12 | 1.05 | 0.851 | -0.832 | -0.247 | 1.29 | -0.0307 | 2.47 | 8.573 | 2887 | -- | -- |
| 69.25 | 0.388 | 12 | 0.889 | 0.824 | -0.926 | -0.143 | -- | -0.0173 | 2.31 | 10.8 | 7964 | -- | -- |
| 67.63 | 0.383 | 12 | 1.05 | 0.848 | -0.835 | -- | 1.24 | -0.0323 | 2.53 | 8.791 | 2909 | -- | -- |
| 69.31 | 0.388 | 12 | 0.893 | 0.832 | -0.931 | -- | -- | -0.00973 | 2.54 | 10.5 | 8601 | -- | -- |
| 87.11 | 0.437 | 12 | 0.863 | -- | -1.52 | -- | 1.21 | -0.024 | -- | 8.791 | 2909 | -- | -- |
| 83.38 | 0.428 | 12 | 0.385 | 0.794 | -- | -0.205 | -- | -0.29 | 2.48 | -- | -- | -- | -- |
| 83.52 | 0.428 | 12 | 0.391 | 0.794 | -- | -- | -- | -0.289 | 2.54 | -- | -- | -- | -- |
| 88.35 | 0.44 | 12 | 0.696 | -- | -1.49 | -- | -- | -0.0699 | -- | 2.245 | 6096 | -- | -- |
| 80.37 | 0.418 | 12 | -- | 0.818 | -0.505 | -- | -- | -0.242 | 2.32 | 18.74 | 2012 | -- | -- |
| 120.56 | 0.513 | 12 | 0.424 | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
| 87.54 | 0.438 | 12.1 | -- | 0.802 | -- | -- | -- | -0.332 | 2.55 | -- | -- | -- | -- |
| 99.92 | 0.467 | 12 | -- | -- | -1.06 | -- | -- | -0.171 | -- | 18.7 | 1749 | -- | -- |
| 125.31 | 0.522 | 12 | -- | -- | -- | -- | -- | -0.316 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 3 | 66.10 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 10 | 66.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 11 | 66.22 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 14 | 66.23 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 35 | 66.41 | wind | 9 | 43200 | > th | dose independent | sin | 12 | NA |
| 37 | 66.42 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 38 | 66.43 | wind | 9 | 43200 | < th | dose independent | sin | 12 | NA |
| 41 | 66.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 44 | 66.47 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 47 | 66.50 | wind | 3 | 43200 | > th | dose dependent | sin | 12 | NA |
| 49 | 66.50 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 18 |
| 50 | 66.52 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 65 | 66.59 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 72 | 66.62 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 73 | 66.62 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 77 | 66.64 | wind | 5 | 43200 | < th | dose independent | sin | 12 | NA |
| 78 | 66.64 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 90 | 66.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 103 | 66.71 | wind | 5 | 43200 | > th | dose independent | sin | 12 | NA |
| 106 | 66.73 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 114 | 66.75 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 122 | 66.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 128 | 66.78 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 137 | 66.80 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 161 | 66.85 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 21 |
| 164 | 66.87 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 18 |
| 166 | 66.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 193 | 66.93 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 194 | 66.93 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 198 | 66.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 203 | 66.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 211 | 66.96 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 242 | 67.02 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 22 |
| 244 | 67.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 292 | 67.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 320 | 67.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 324 | 67.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 339 | 67.15 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 22 |
| 346 | 67.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 429 | 67.23 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 451 | 67.26 | temperature | 15 | 1440 | > th | dose dependent | sin | 16 | NA |
| 458 | 67.27 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 470 | 67.28 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 512 | 67.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 528 | 67.33 | wind | 3 | 43200 | > th | dose dependent | sin | 4 | NA |
| 539 | 67.33 | wind | 3 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 545 | 67.34 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 557 | 67.35 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 559 | 67.35 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 567 | 67.35 | wind | 9 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 582 | 67.36 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 615 | 67.38 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 622 | 67.39 | wind | 9 | 43200 | > th | dose dependent | sin | 18 | NA |
| 638 | 67.40 | wind | 5 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 643 | 67.40 | wind | 9 | 43200 | < th | dose dependent | sin | 4 | NA |
| 656 | 67.41 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 16 |
| 657 | 67.41 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 22 |
| 671 | 67.42 | wind | 5 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 725 | 67.45 | wind | 9 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 748 | 67.46 | wind | 9 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 789 | 67.48 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 846 | 67.50 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 858 | 67.51 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 859 | 67.51 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 865 | 67.51 | wind | 9 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 877 | 67.51 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 879 | 67.52 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 887 | 67.52 | wind | 9 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 897 | 67.52 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 917 | 67.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 8 |
| 925 | 67.54 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 931 | 67.54 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 951 | 67.55 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 957 | 67.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 958 | 67.55 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 967 | 67.56 | wind | 5 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 968 | 67.56 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 998 | 67.57 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 23 |