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Os04g0515400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0279) R2 : 0.809
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.75 (0.0668) R2dC : 0.289 R2C : 0.23
β3 : 2.27 (0.0824) R2dE : 0.364 R2E : 0.422
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.789 (0.0615) R2dN8 : 0.102 R2N8 : 0.187
σ : 0.516
deviance : 122.91
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C
peak time of C : 13.8
E
wheather : temperature
threshold : 19.6
memory length : 24907
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.91 0.514 10.5 -0.163 1.82 1.7 -1.01 -6.84 0.836 13.8 26 5372 -- --
126.17 0.523 10.4 0.252 1.82 2.09 -1.13 -- 0.774 14.3 20.4 22145 -- --
120.71 0.512 10.5 -0.187 1.8 1.78 -- -7 0.897 13.7 26.96 5399 -- --
122.67 0.516 10.4 -0.111 1.74 2.37 -- -- 0.768 13.9 19.7 24934 -- --
277.21 0.78 10.3 1.57 -- 1.06 -- -1.92 1.34 -- 26.96 5399 -- --
193.95 0.653 10.2 2.27 1.72 -- -0.936 -- 1.63 14 -- -- -- --
197.22 0.658 10.2 2.24 1.72 -- -- -- 1.62 13.9 -- -- -- --
283.84 0.788 10.2 1.91 -- 0.991 -- -- 1.39 -- 26.7 7548 -- --
122.91 0.516 10.4 -- 1.75 2.27 -- -- 0.789 13.8 19.6 24907 -- --
375.1 0.905 10.2 2.17 -- -- -- -- 1.58 -- -- -- -- --
329.81 0.85 10.2 -- 1.67 -- -- -- 1.37 13.9 -- -- -- --
308.58 0.818 10.4 -- -- 2.27 -- -- 0.802 -- 19.2 24832 -- --
499.57 1.04 10.2 -- -- -- -- -- 1.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.89 radiation 1 14400 < th dose dependent rect. 19 10
3 107.33 radiation 1 14400 < th dose dependent rect. 22 7
5 107.40 radiation 1 14400 < th dose dependent rect. 24 5
8 110.43 radiation 1 14400 < th dose dependent rect. 3 2
11 112.62 radiation 20 43200 < th dose independent rect. 17 16
12 112.65 radiation 20 43200 < th dose independent rect. 6 3
14 112.65 radiation 20 43200 < th dose independent rect. 3 6
25 112.94 radiation 20 43200 < th dose independent rect. 8 1
27 113.01 radiation 1 43200 > th dose independent rect. 18 1
37 113.19 radiation 40 43200 < th dose dependent rect. 19 10
39 113.36 wind 1 43200 < th dose dependent rect. 23 3
56 113.57 radiation 40 43200 < th dose independent rect. 10 1
57 113.66 radiation 1 43200 < th dose dependent rect. 18 3
58 113.66 radiation 1 43200 < th dose dependent rect. 18 7
69 113.80 temperature 25 4320 > th dose independent rect. 10 1
80 114.27 temperature 25 4320 < th dose independent rect. 10 1
81 114.28 radiation 1 43200 < th dose independent rect. 18 7
82 114.29 radiation 1 43200 < th dose independent rect. 18 3
84 114.30 radiation 1 43200 < th dose independent rect. 18 5
95 114.71 radiation 20 43200 < th dose independent sin 11 NA
96 114.71 radiation 40 43200 < th dose independent rect. 7 4
97 114.71 radiation 40 43200 < th dose independent rect. 17 18
101 114.72 radiation 40 43200 < th dose independent rect. 3 8
104 114.72 radiation 40 43200 < th dose independent rect. 23 12
105 114.72 radiation 40 43200 < th dose independent rect. 21 14
128 114.80 radiation 40 43200 > th dose dependent rect. 10 1
132 114.91 radiation 40 43200 < th dose independent rect. 15 21
133 114.95 humidity 90 43200 > th dose independent rect. 22 1
245 115.64 radiation 40 43200 > th dose dependent rect. 7 5
266 115.72 temperature 25 4320 < th dose independent rect. 9 3
274 115.80 atmosphere 1005 43200 > th dose independent rect. 16 1
283 115.82 radiation 30 43200 < th dose dependent rect. 22 7
326 115.94 humidity 90 43200 > th dose independent rect. 19 5
327 115.95 atmosphere 1005 43200 > th dose independent rect. 18 2
343 116.12 radiation 40 43200 > th dose dependent sin 10 NA
363 116.17 atmosphere 1005 43200 < th dose independent rect. 16 7
369 116.24 atmosphere 1005 43200 > th dose independent rect. 16 4
374 116.27 atmosphere 1005 43200 > th dose independent rect. 15 7
379 116.30 wind 3 43200 > th dose dependent rect. 11 3
386 116.35 radiation 40 43200 < th dose independent rect. 7 9
387 116.35 radiation 40 43200 < th dose independent rect. 7 12
394 116.35 radiation 40 43200 < th dose independent rect. 3 16
404 116.35 radiation 40 43200 < th dose independent rect. 23 20
405 116.35 radiation 40 43200 < th dose independent rect. 1 21
414 116.35 radiation 40 43200 < th dose independent rect. 9 23
415 116.35 radiation 40 43200 < th dose independent rect. 17 23
417 116.36 radiation 40 43200 < th dose independent no NA NA
511 116.37 humidity 90 43200 > th dose dependent rect. 5 1
550 116.47 radiation 40 43200 > th dose independent rect. 10 1
568 116.49 atmosphere 1005 43200 < th dose independent rect. 18 1
633 116.61 atmosphere 1005 43200 < th dose independent rect. 16 1
635 116.61 atmosphere 1005 43200 > th dose independent rect. 11 9
738 116.78 temperature 25 4320 > th dose independent rect. 5 8
752 116.82 wind 9 43200 < th dose dependent rect. 11 1
786 116.93 atmosphere 1005 43200 > th dose independent rect. 11 6
789 116.93 radiation 1 43200 < th dose dependent rect. 9 1
800 116.97 temperature 25 4320 < th dose independent rect. 6 7
873 117.17 atmosphere 1005 43200 < th dose independent rect. 11 8
880 117.19 radiation 10 43200 > th dose dependent rect. 17 16
887 117.23 wind 1 43200 > th dose dependent rect. 11 1
959 117.38 atmosphere 1005 43200 > th dose independent sin 18 NA
961 117.39 temperature 25 4320 < th dose independent rect. 17 1
967 117.40 radiation 1 43200 > th dose independent rect. 8 2
968 117.41 atmosphere 1005 43200 < th dose independent sin 18 NA