BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0512400 Os04g0512400|AK103203
(629 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0512400 Similar to Midline 1 protein (Tripartite motif... 1295 0.0
Os05g0512000 Zinc finger, RING-type domain containing protein 320 3e-87
Os05g0486600 134 3e-31
>Os04g0512400 Similar to Midline 1 protein (Tripartite motif protein 18)
Length = 629
Score = 1295 bits (3352), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/629 (98%), Positives = 621/629 (98%)
Query: 1 MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAI 60
MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAI
Sbjct: 1 MESFRRFLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAI 60
Query: 61 CKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRN 120
CKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRN
Sbjct: 61 CKSAYRSQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQGTPESGNRN 120
Query: 121 GAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPALETRGAADVTAMPTILVQKG 180
GAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPALETRGAADVTAMPTILVQKG
Sbjct: 121 GAEKSDQVKSYTPVASKLAYNQSTGLAYGNVDGVKERNPALETRGAADVTAMPTILVQKG 180
Query: 181 PCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKREPNTANDDNRELKRQKSTDQDDR 240
PCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKREPNTANDDNRELKRQKSTDQDDR
Sbjct: 181 PCRSQSSDGPRDLDCDSNDLEGELITSRSSPQSVLKREPNTANDDNRELKRQKSTDQDDR 240
Query: 241 QPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFF 300
QPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFF
Sbjct: 241 QPAVAGAWKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFF 300
Query: 301 TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFV 360
TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFV
Sbjct: 301 TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFV 360
Query: 361 MLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWV 420
MLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWV
Sbjct: 361 MLCPSHSSKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWV 420
Query: 421 ICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGK 480
ICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGK
Sbjct: 421 ICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGK 480
Query: 481 WVLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSG 540
WVLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSG
Sbjct: 481 WVLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSG 540
Query: 541 HFMPNYKVHLEDLITAAGGSILDKADLSSTSLIIYSMEPPQGSDPDTLNEVIRKRKXXXX 600
HFMPNYKVHLEDLITAAGGSILDKADLSSTSLIIYSMEPPQGSDPDTLNEVIRKRK
Sbjct: 541 HFMPNYKVHLEDLITAAGGSILDKADLSSTSLIIYSMEPPQGSDPDTLNEVIRKRKAEAE 600
Query: 601 XXXXTIGSRAVPHTCVLDSIASCTVQLTM 629
TIGSRAVPHTCVLDSIASCTVQLTM
Sbjct: 601 ELAATIGSRAVPHTCVLDSIASCTVQLTM 629
>Os05g0512000 Zinc finger, RING-type domain containing protein
Length = 987
Score = 320 bits (819), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 168/391 (42%), Positives = 230/391 (58%), Gaps = 23/391 (5%)
Query: 250 CEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFFTGDIANNLE 309
C FC + TE +G + HY +G+ + NV+H H+ C+EWAP +F D A NL
Sbjct: 604 CAFCQTDVITEESGEMVHYQNGKQVPAEFNGGANVVHSHKNCLEWAPDVYFEDDSAFNLT 663
Query: 310 PELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFVMLCPSHSSK 369
ELAR+ +IKC+ CG+KGAALGC SCR+SFH CA I CRWD+ENFVMLCP H S
Sbjct: 664 TELARSRRIKCACCGIKGAALGCFEMSCRRSFHFTCAKLIPECRWDNENFVMLCPLHRST 723
Query: 370 KLPCERS---KSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLW-TASPFLTSEWVICGSA 425
KLP E S K +KT+L+ SS + S + W + SP +WV+C S+
Sbjct: 724 KLPNENSEQQKQPKRKTTLKGSS------QIGSNQDCGNNWKWPSGSP---QKWVLCCSS 774
Query: 426 LSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGKWVLNI 485
LSS EKE++ +F G+ ++ W NVTHVIA+TD GAC RTLK LMAIL G+W+++I
Sbjct: 775 LSSSEKELVSEFAKLAGVPISATWSPNVTHVIASTDLSGACKRTLKFLMAILNGRWIVSI 834
Query: 486 NWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPN 545
+W+K CME EP+ E +E+++DVHG DGPR+GR R + P LF + FY G + +
Sbjct: 835 DWVKTCMECMEPIDEHKFEVATDVHGITDGPRLGRCRVIDRQPKLFDSMRFYLHGDYTKS 894
Query: 546 YKVHLEDLITAAGGSILDKA----------DLSSTSLIIYSMEPPQGSDPDTLNEVIRKR 595
Y+ +L+DL+ AAGG +L + D SS LI+YS E + + +R
Sbjct: 895 YRGYLQDLVVAAGGIVLQRKPVSRDQQKLLDDSSDLLIVYSFENQDRAKSKAETKAADRR 954
Query: 596 KXXXXXXXXTIGSRAVPHTCVLDSIASCTVQ 626
+ G R V V+DSIA+C +Q
Sbjct: 955 QADAQALACASGGRVVSSAWVIDSIAACNLQ 985
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 15 LQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAICKSAYRSQDLRPAS 74
L+KM EL CP+CL LL++ + C H C+ C T SC +CK +R +++RPA
Sbjct: 7 LEKMGRELKCPICLSLLSSAVSISCNHVFCNDCLTESMKSTSSCPVCKVPFRRREMRPAP 66
Query: 75 HLEAIVNIHRSLSSTV-SSMVTQQEAQADIPVAK 107
H++ +V+I +S+ + +++V+ QEA PV K
Sbjct: 67 HMDNLVSIFKSMEAAAGTNVVSTQEA----PVVK 96
>Os05g0486600
Length = 556
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 89/133 (66%), Gaps = 3/133 (2%)
Query: 249 KCEFCHSSKTT-ESTGPLSHYLHGEPLE-DNQAWKP-NVLHVHEKCIEWAPQAFFTGDIA 305
+C FCHS +T + GP++HY G+ + DN + P ++++VH+KC+EWAPQ F+ GD
Sbjct: 86 ECVFCHSFRTPPQFHGPMAHYQKGKLVSSDNGSPCPTDIIYVHKKCLEWAPQVFYEGDTI 145
Query: 306 NNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFVMLCPS 365
NLE E+ RA+K+KC C L GAALGC C +S+HVPCA CRWD +N ++CP
Sbjct: 146 VNLELEIKRAAKLKCKRCKLPGAALGCYYTKCNRSYHVPCAMMTLNCRWDVDNGCVMCPE 205
Query: 366 HSSKKLPCERSKS 378
H++ LPC++ S
Sbjct: 206 HATMPLPCDKISS 218
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 16/236 (6%)
Query: 406 DGLWTASPFLTSEWVICGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGA 465
D L+T + WV+ GSALS EK+ L +F T TV N W NVTHVI A
Sbjct: 312 DHLYTERDCPSDLWVLLGSALSESEKDSLQEFASWTDATVVNEWTENVTHVIVGKSAGSA 371
Query: 466 CARTLKVLMAILAGKWVLNINWLKACMEAKEPVPEEPYEI--SSDVHGSFDGPRMGRLRA 523
+R+ +VLMA+L GKWV+ + W+ C+ P PE +E+ S D S G + R +A
Sbjct: 372 WSRSYEVLMALLFGKWVVTVGWIMDCLVKFIPSPEASFELRFSHDSRASIGGNKKRRNQA 431
Query: 524 MQNAPHLFAGLTFYFSGHFMPNYKVHLEDLITAAGGSILD--------KADLSSTSL--- 572
+ A LF+GL F S + P+ + H++ LI AAGG IL+ + +L ++
Sbjct: 432 SEGAQKLFSGLNFCLSAYINPDDRQHIQSLIAAAGGQILETNGGSHLLRENLEKVAVKPC 491
Query: 573 -IIYSMEPPQGSDPDTLNEVIRKRKXXXXXXXXTIGSRAVPHTCVLDSIASCTVQL 627
+Y P+ L+++ ++ G++ + H V D+IA+ Q+
Sbjct: 492 YFVYDGGAPRDFTQGLLDDL--PKEMEEGREYAACGAQVISHLRVFDAIAAYDAQI 545
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,316,575
Number of extensions: 943732
Number of successful extensions: 2782
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2777
Number of HSP's successfully gapped: 5
Length of query: 629
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 522
Effective length of database: 11,448,903
Effective search space: 5976327366
Effective search space used: 5976327366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)