Os04g0512400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Midline 1 protein (Tripartite motif protein 18).
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Os04g0512400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Midline 1 protein (Tripartite motif protein 18).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.49 | 0.675 | 5.46 | -2.26 | 0.347 | 1.26 | -1.33 | 0.412 | -0.21 | 6.05 | 25 | 295 | -- | -- |
| 206.67 | 0.67 | 5.45 | -2.19 | 0.34 | 1.23 | -1.23 | -- | -0.189 | 6.13 | 25.2 | 293 | -- | -- |
| 210.34 | 0.675 | 5.44 | -2.18 | 0.345 | 1.22 | -- | -0.159 | -0.183 | 6.34 | 25.03 | 270 | -- | -- |
| 210.37 | 0.676 | 5.44 | -2.2 | 0.349 | 1.24 | -- | -- | -0.189 | 6.34 | 24.95 | 280 | -- | -- |
| 214.85 | 0.683 | 5.43 | -2.11 | -- | 1.36 | -- | -0.216 | -0.119 | -- | 25.93 | 306 | -- | -- |
| 228.57 | 0.709 | 5.5 | -2.51 | 0.505 | -- | -1.26 | -- | -0.441 | 5.72 | -- | -- | -- | -- |
| 232.45 | 0.714 | 5.5 | -2.52 | 0.497 | -- | -- | -- | -0.436 | 5.63 | -- | -- | -- | -- |
| 214.9 | 0.683 | 5.44 | -2.16 | -- | 1.37 | -- | -- | -0.134 | -- | 25.9 | 308 | -- | -- |
| 324.84 | 0.839 | 5.35 | -- | 0.21 | 2.16 | -- | -- | 0.216 | 7.38 | 25.01 | 320 | -- | -- |
| 245.3 | 0.732 | 5.5 | -2.51 | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
| 400.09 | 0.936 | 5.43 | -- | 0.458 | -- | -- | -- | -0.155 | 5.87 | -- | -- | -- | -- |
| 326.15 | 0.841 | 5.35 | -- | -- | 2.19 | -- | -- | 0.258 | -- | 25.7 | 336 | -- | -- |
| 410.95 | 0.946 | 5.44 | -- | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.32 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 11 |
| 11 | 199.58 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 14 |
| 13 | 199.65 | temperature | 25.0 | 720 | < th | dose independent | sin | 15 | NA |
| 22 | 200.30 | temperature | 25.0 | 720 | > th | dose independent | sin | 15 | NA |
| 66 | 201.59 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 69 | 201.75 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 104 | 202.59 | temperature | 25.0 | 720 | > th | dose independent | rect. | 22 | 2 |
| 108 | 202.63 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 113 | 202.71 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 146 | 203.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 7 |
| 150 | 203.57 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 162 | 203.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 174 | 203.92 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 242 | 204.86 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 268 | 205.18 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 269 | 205.18 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 290 | 205.45 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 300 | 205.56 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 332 | 205.80 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 18 | 21 |
| 346 | 205.94 | temperature | 30.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 372 | 206.13 | temperature | 25.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 417 | 206.33 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 427 | 206.41 | temperature | 20.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 461 | 206.54 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 473 | 206.57 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 481 | 206.59 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 497 | 206.69 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 503 | 206.72 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 559 | 207.07 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 560 | 207.07 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 595 | 207.23 | wind | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 599 | 207.26 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 602 | 207.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 691 | 207.84 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 693 | 207.84 | temperature | 20.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 736 | 208.11 | wind | 5.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 752 | 208.19 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 755 | 208.19 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 759 | 208.19 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 761 | 208.19 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 766 | 208.19 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 767 | 208.19 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 768 | 208.19 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 773 | 208.19 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 775 | 208.20 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 777 | 208.21 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 779 | 208.21 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 830 | 208.49 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 978 | 209.14 | wind | 9.0 | 4320 | < th | dose independent | rect. | 3 | 1 |