BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0512400 Os04g0512400|AK103203
(629 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G04020.1 | chr1:1036610-1040045 FORWARD LENGTH=715 355 3e-98
AT4G21070.1 | chr4:11248174-11252633 FORWARD LENGTH=942 319 3e-87
AT3G15120.1 | chr3:5088487-5095482 REVERSE LENGTH=1955 53 5e-07
>AT1G04020.1 | chr1:1036610-1040045 FORWARD LENGTH=715
Length = 714
Score = 355 bits (912), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 175/384 (45%), Positives = 235/384 (61%), Gaps = 24/384 (6%)
Query: 250 CEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFFTGDIANNLE 309
C FC S++ +E+TG + HY G P++ + ++ NV+HVH CIEWAPQ ++ GD NL+
Sbjct: 334 CGFCQSARVSEATGEMLHYSRGRPVDGDDIFRSNVIHVHSACIEWAPQVYYEGDTVKNLK 393
Query: 310 PELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFVMLCPSHSSK 369
ELAR KIKC+ C LKGAALGC VKSCR+S+HVPCA IS CRWD E+F++LCP+HSS
Sbjct: 394 AELARGMKIKCTKCSLKGAALGCFVKSCRRSYHVPCAREISRCRWDYEDFLLLCPAHSSV 453
Query: 370 KLPCERSKSKNKKTSLQRSSSDTMLDDLNSPSTIHMDGLWTASPFLTSEWVICGSALSSQ 429
K P E+S R S L +N ++ +P T E V+CGSALS
Sbjct: 454 KFPNEKSG--------HRVSRAEPLPKINPAELCSLE----QTPAFTKELVLCGSALSKS 501
Query: 430 EKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGKWVLNINWLK 489
+K++++ + T++ W +VTHVIA+TDE GAC RTLKVLM IL GKW++N W+K
Sbjct: 502 DKKLMESLAVRFNATISRYWNPSVTHVIASTDEKGACTRTLKVLMGILNGKWIINAAWMK 561
Query: 490 ACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKVH 549
A ++A +PV EEP+EI D G DGP+ RLRA N P LF GL FYF G F YK
Sbjct: 562 ASLKASQPVDEEPFEIQIDTQGCQDGPKTARLRAETNKPKLFEGLKFYFFGDFYKGYKED 621
Query: 550 LEDLITAAGGSILDKA------------DLSSTSLIIYSMEPPQGSDPDTLNEVIRKRKX 597
L++L+ AGG+IL+ D S+S+++Y+++PP G +I +R
Sbjct: 622 LQNLVKVAGGTILNTEDELGAESSNNVNDQRSSSIVVYNIDPPHGCALGEEVTIIWQRAN 681
Query: 598 XXXXXXXTIGSRAVPHTCVLDSIA 621
GSR V HT VL+SIA
Sbjct: 682 DAEALASQTGSRLVGHTWVLESIA 705
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 7 FLNPLVLNLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAICKSAYR 66
+NP VL+LQK+ELEL CP+CLKLLN P +LPC H C C + C +CKS +
Sbjct: 8 LMNPWVLHLQKLELELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESGCPVCKSKHP 67
Query: 67 SQDLRPASHLEAIVNIHRSLSSTVSSMVTQQEAQADIPVAKTSFQ--GTPESGNRNGAEK 124
+ R +E++++I++SL++ VS + Q + D + +P+ G +E
Sbjct: 68 KKARRDLRFMESVISIYKSLNAAVSVHLPQLQIPNDCNYKNDALNNSNSPKHGESEDSEM 127
Query: 125 SDQ 127
+D+
Sbjct: 128 TDK 130
>AT4G21070.1 | chr4:11248174-11252633 FORWARD LENGTH=942
Length = 941
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 165/389 (42%), Positives = 235/389 (60%), Gaps = 24/389 (6%)
Query: 248 WKCEFCHSSKTTESTGPLSHYLHGEPLEDNQAWKPNVLHVHEKCIEWAPQAFFTGDIANN 307
+ C FC S+ TE++G ++HY GEP+ + V+HVH+ C EWAP +F N
Sbjct: 562 FTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEWAPNVYFNDLTIVN 621
Query: 308 LEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPCAHGISGCRWDDENFVMLCPSHS 367
L+ EL R+ +I CS CGLKGAALGC KSC+ SFHV CA I CRWD+ FVMLCP +
Sbjct: 622 LDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRWDNVKFVMLCPLDA 681
Query: 368 SKKLPCERSKSKNKKTSLQRSSSDTMLDDLNSPS------TIHMDGLWTASPFLTSEWVI 421
S KLPCE + SK++K +R+ + + S +H+ S L V+
Sbjct: 682 SIKLPCEEANSKDRK--CKRTPKEPLHSQPKQVSGKANIRELHIKQFHGFSKKL----VL 735
Query: 422 CGSALSSQEKEILDQFEHQTGITVTNGWRSNVTHVIANTDECGACARTLKVLMAILAGKW 481
S L+ +EK ++ +F +G+T++ W S VTHVIA+ +E GAC RTLK +MAIL GKW
Sbjct: 736 SCSGLTVEEKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKW 795
Query: 482 VLNINWLKACMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGH 541
+L I+W+KACM+ + V EEPYEI+ DVHG +GP +GR RA++ P LF GL FY G
Sbjct: 796 ILTIDWIKACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKKPKLFTGLKFYIMGD 855
Query: 542 FMPNYKVHLEDLITAAGGSILDKADLSS-----TSLIIYSMEPPQGSDPDTLNEVIRKRK 596
F YK +L+DLI AAGG+IL + +SS ++++++S+EP + + + +R+
Sbjct: 856 FELAYKGYLQDLIVAAGGTILRRRPVSSDDNEASTIVVFSVEPSK-------KKTLTQRR 908
Query: 597 XXXXXXXXTIGSRAVPHTCVLDSIASCTV 625
+ +RA + VLDSIA C +
Sbjct: 909 SDAEALAKSARARAASSSWVLDSIAGCQI 937
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 14 NLQKMELELTCPVCLKLLNAPTMLPCYHTSCSKCATTRTMDGYSCAICKSAYRSQDLRPA 73
+L++M EL CP+CL L N+ L C H C+ C +C +CK Y +++R A
Sbjct: 6 HLERMGRELKCPICLSLYNSAVSLSCNHVFCNACIVKSMKMDATCPVCKIPYHRREIRGA 65
Query: 74 SHLEAIVNIHRSL--SSTVSSMVTQ 96
H++++V+I++++ +S + V+Q
Sbjct: 66 PHMDSLVSIYKNMEDASGIKLFVSQ 90
>AT3G15120.1 | chr3:5088487-5095482 REVERSE LENGTH=1955
Length = 1954
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 20/122 (16%)
Query: 287 VHEKCIEWAPQAFFTG-DIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRKSFHVPC 345
VH+ C W+P+ +F G N+ L R +KC+ C GA GC PC
Sbjct: 560 VHQNCAVWSPEVYFAGVGCLKNIRAALFRGRSLKCTRCDRPGATTGCR----------PC 609
Query: 346 AHGISGCRWDDENFVMLCPSHSSKKLPCERS--------KSKNKKTSLQRSSSDTMLDDL 397
A +GC +D F++ C H P R K+K + +++ S+D D+
Sbjct: 610 ARA-NGCIFDHRKFLIACTDHRHHFQPHGRQCQVRMTKMKTKRMRLEMKKHSNDAWRKDV 668
Query: 398 NS 399
+
Sbjct: 669 EA 670
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.129 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,143,101
Number of extensions: 602030
Number of successful extensions: 2004
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 5
Length of query: 629
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 524
Effective length of database: 8,227,889
Effective search space: 4311413836
Effective search space used: 4311413836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)